Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq46 141 1e-28 >seq46 Length=385502 Score = 141 bits (156), Expect = 1e-28 Identities = 899/1415 (64%), Gaps = 52/1415 (4%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTC--ATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 |||||| |||||| ||| ||| ||||| || | || ||||| | | || || Sbjct 12210 TGGAAAGACCACAG--CATCTTCTGATGCGGGTTTCTTGTGGGATTCACTGTGGTGATAT 12267 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACAC 104330 ||| ||| | ||||||||||| | | || ||| ||| || | ||| ||||||| Sbjct 12268 TGAAGCTGCACTTGAGACATACGAGTTGTTATCGCAAAAATATTTT-ACTCATGCAACAC 12326 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | || ||||| ||| | || || ||| |||| |||||||| ||| || | || | Sbjct 12327 CCACACTCTTTAATTCAGGCACGCCACGACCTCAAATGTCATCTTGTTTTTTACTCAGGA 12386 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA- 104449 || || ||||| |||||||| | || || | || | || |||||| | | Sbjct 12387 TTCCAGAAGATTCAATAAACGGTATTTTTGACACATTAACTAAATG--CGCAAACATTAG 12444 Query 104450 -AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT 104508 ||| || || || |||| || | | || | |||| | | || ||| Sbjct 12445 TAAGACTGCAGGTGGCCTTGGAGTGGCAGTGAGTAATATTAGAGGAACTGGTTCATATAT 12504 Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568 ||| ||||||||||| || | || | ||||| ||| | || || | ||| | ||| Sbjct 12505 TCGAGGGACAAATGGAAGGTCCAACGGATTAATTCCGATGTTGCGTGTTTATAATGACAC 12564 Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGA 104625 || | ||| | |||||| ||| | || || || | || ||| | ||| | || Sbjct 12565 TGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGGA 12624 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 || ||||||| ||| | | ||||| |||| | | || || || | || || Sbjct 12625 ACCGTGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGAAAAATCACGGGAAGGAAGA 12684 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | | || ||||||||||| | || |||||| |||| ||||| |||||| ||||||| Sbjct 12685 GATGAGATGTCGCGATCTCTTTCCTGCCCTCTGGGTTCCTGATCTGTTCATGGAGAGAGT 12744 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCTGGTCTCTCCGATG 104804 ||| || | ||||| |||| | || || || || ||| || | |||| Sbjct 12745 TGAAAAGGATCAAGATTGGACTCTAATGTGCCCGGATGAATGCA-GGGGATTGCAAGATG 12803 Query 104805 CCGTGGGTGAGGAGTTT--GAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 |||||| || ||| |||| || || | |||| ||| || |||| || | | Sbjct 12804 TTTGGGGTGATGACTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAAG 12861 Query 104863 TGCGACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 ||| || ||| || | | | ||| || | || |||||| ||||| | Sbjct 12862 GAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTGCAGGCTCAAATTGAGACGG 12920 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTG 104980 | ||||||| || ||| ||||| | ||| || | || |||||||| || |||||| Sbjct 12921 GAACACCATTTATTTGTTATAAAGATG-CTGCAAATAGTAAAAGTAATCAGAAAAATTTG 12979 Query 104981 GG---TGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGAT 105037 || | | || ||| || | || || |||||| |||| | || || Sbjct 12980 GGTACTATTGTCTCAAGT---AACTTATGCACTGAAATCATGGAGTACACTAGTGCGGAC 13036 Query 105038 GAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACA 105097 || || || ||||| || || || || | || || |||| ||| || | | | Sbjct 13037 GAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTTGTTGACAAAAATAAC 13096 Query 105098 AAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTG-TCACCAAAAACCTAAA 105156 ||||| ||||||| ||| || | | |||||||| ||| || | || | || | || Sbjct 13097 AAGACGTTTGATTTTGATAAGTTAAAAGAAGTTAC-AAAGGTGATTACAAGGAATTTGAA 13155 Query 105157 CAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | ||||| | || ||| || | | | ||| || | ||||| ||| | || Sbjct 13156 TAAAATAATTGACGTTGGATATTATT--CTCTTAAAGAATG-TAAAAAATCGAATTTAAG 13212 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA-TGTAT--TCATTCTTTGTCG 105270 || |||||| | || | || |||| |||||||| || ||| | | || ||| || Sbjct 13213 GCATCGTCCATTGGGGATTGGCATTCAAGGTCTCGCTGACTGTTTTATGATGCTTCGTTT 13272 Query 105271 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTA 105330 | ||| || || || | ||| ||| || | ||| | || |||||| ||| || Sbjct 13273 AC---CATACGAGTCGGAGGGAGCTAAGAAATTGAATAAACAAATCTTTGAGGTCATCTA 13329 Query 105331 TCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390 | | || |||||||| || || | ||| | || || |||| ||||| ||||| | Sbjct 13330 TTATGCAGCTCTTGACGCTAGCTGTGAGCTTGCGGAAAAATATGGACCATACGAAACATA 13389 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG----GTGAGA 105446 | | |||||||| || |||| | | |||||||||||||||| || | ||| Sbjct 13390 TTATGGTTCTCCTGCAAGTAAAGGTATTTTACAATTTGATATGTGGGGAGTTACGCCAGA 13449 Query 105447 C-CA-AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 | || |||| | || ||||| | || || || | || | | ||| |||| Sbjct 13450 CTCAGGGCTT---TGTGATTGGGATTCACTTAAAGATAGAATTTCCAAATATGGTATTCG 13506 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||| | | | || |||||||||||||||||||||| ||||||| || ||||| || Sbjct 13507 TAATTCTTTATTAATATCTCCAATGCCAACAGCCTCCACTTCACAAATTTTAGGTAACAA 13566 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTATC 105599 || | ||||| || | ||| | ||||| |||| Sbjct 13567 CGAGAGTTTTGAGCCATTCACTTCAAACATTTATC 13601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260384426680