Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq45 154 3e-32 seq6 140 8e-28 >seq45 Length=133594 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| ||||| ||||| | ||||| || ||||| || | ||||| ||| Sbjct 54804 GTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGTTCTACCATCCTCTAATTGCTTTCCT 54745 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | |||||||| ||||| |||| ||||||||| || || |||||| || Sbjct 54744 GCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTTGCCTTA 54685 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| || || || |||||| || | |||||| |||||||| || | |||| Sbjct 54684 ACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTC 54625 Query 211098 TTTACAAACACCTGCATTTT 211117 || ||||| | |||||| || Sbjct 54624 TTAACAAAAATCTGCATATT 54605 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 55282 AAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 55223 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| |||| |||||| Sbjct 55222 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTC 55163 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || || |||||| || || || ||||| || || || ||||| || | ||| Sbjct 55162 CTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAAGT 55103 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | ||||| || || | |||||| Sbjct 55102 GATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| ||||| ||||| | || || || ||||| || | || || ||| Sbjct 55032 GTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 54973 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | |||||||| ||||| || | || ||||| || || |||||| || Sbjct 54972 GCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCCTCCTTATCTTGAATCTTTGCCTTA 54913 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || || || || ||||| || | |||||| ||||||||||| | |||| Sbjct 54912 ACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATGGTCTTTCCCGTCAAAGTC 54853 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 54852 TTGACGAAAATCTGCAT 54836 >seq6 Length=322908 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | ||| | ||||||||| || ||||| || ||||| | || || || Sbjct 207075 AAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGATAGAGTTCT 207016 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| ||||| || || ||||| | || ||||| |||||||||| || || Sbjct 207015 GCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTC 206956 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| |||||||||||| || || || || || || || || |||||| || | || Sbjct 206955 CTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAACTTCCAATGT 206896 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| || || ||||| || ||||| | ||||| || Sbjct 206895 GATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCATCTT 206854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151153456805