Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq45 136 3e-27 seq6 114 9e-21 >seq45 Length=133594 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||| | || ||||| || |||||| | |||||||| | | Sbjct 55064 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAGACCATCACTTTAGAAGTTGAGCCTTCA 55123 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| |||| | ||| ||| || || ||||| | || || ||||| Sbjct 55124 GATACTATCGAGAATGTTAAGGC-AAAGATTCAAGATAAGGAAGGAATTCCACCTGATCA 55182 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | |||||||| Sbjct 55183 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 55242 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||||||||| ||||| ||||| || || | |||| ||| Sbjct 55243 CATTCAAAAAGAGTCCACTTTACACTTAGTATTGAGACTTAGAGGCGGA 55291 Score = 125 bits (138), Expect = 5e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | |||||||| || |||||| | |||||||| | | Sbjct 54836 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACTTTGGAAGTTGAGCCTTCA 54895 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || |||| | ||| ||| || || || || |||| || ||||| Sbjct 54896 GATACAATTGAGAACGTTAAGGC-AAAGATTCAAGATAAGGAGGGGATACCACCTGATCA 54954 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | |||||||| Sbjct 54955 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 55014 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| ||||||||||| || ||||||||||| || || Sbjct 55015 CATTCAAAAAGAGTCTACCTTACATTTAGTATTGAG 55050 Score = 118 bits (130), Expect = 7e-22 Identities = 162/223 (73%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| ||||| || | || ||||| || |||||| | |||||||| | Sbjct 54605 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 54664 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| | || ||| |||| | ||| ||| || || ||||| | || || || Sbjct 54665 TCAGATACTATCGAGAATGTTAAGGC-AAAGATTCAAGATAAGGAAGGAATTCCACCTGA 54723 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCG 23782 |||||| ||||| || ||||| || || ||| | || || |||| | || | | Sbjct 54724 TCAACAACGTTTGATCTTTGCAGGAAAGCAATTAGAGGATGGTAGAACCCTCTCT----G 54779 Query 23783 ATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||||||| ||||||||||| || ||||||||||| || || Sbjct 54780 ATTACAACATTCAAAAAGAGTCTACCTTACATTTAGTATTGAG 54822 >seq6 Length=322908 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| |||||||| || || || || || ||||| | |||||||| | Sbjct 206854 AAGATGCAAATTTTTGTTAAAACTCTAACAGGGAAGACCATCACATTGGAAGTTGAACCT 206913 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| |||| | |||| ||| || || || || || | || || ||| Sbjct 206914 TCGGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 206973 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||||| || ||||| || || ||| ||||||| | | ||| || |||||| Sbjct 206974 CAACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGAACTCTATCTGATTAC 207033 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || || || |||||||| || || ||||| || || Sbjct 207034 AATATCCAGAAGGAGTCCACTTTGCACTTAGTATTGAG 207071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009365188956