Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq37 165 7e-36 >seq37 Length=17717 Score = 165 bits (182), Expect = 7e-36 Identities = 575/867 (66%), Gaps = 43/867 (5%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||||||||| ||||| ||||| | | ||||| | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||| |||| || ||||| | | ||||| || ||| ||| || || | ||| Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCCAAG-GCGAAAAGT 12676 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGT-TCGCAGTTAATTCCAATTA- 4434 |||| |||||| |||||||| ||||| ||| ||| ||| ||| |||| || ||||| | Sbjct 12677 AATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCG-AGTTCATACCAATAAG 12735 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTT--ACGGCTTCTGTGAT 4492 ||| ||||| || | || |||| | || | | | || || ||||||| Sbjct 12736 ATCA-ACAGGAAGAGA--ATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTG---- 12788 Query 4493 TATATCTTTTATTTTA-TCTTTAGATGGTTTATTTAC---TAAGTATCCAA-ACAATAAA 4547 |||| ||| || | ||| || | | ||||| |||| | | | | |||| Sbjct 12789 -ATATGATTTGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACTAAA 12847 Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||||||| ||| | ||||| || | |||||| ||||| |||||||| || | | Sbjct 12848 CAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGT 12907 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | || | |||||||||||||| || || ||| |||||||| | Sbjct 12908 CCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGA 12967 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAA-TCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || || || || || || | | | ||| || |||| || | ||| | || Sbjct 12968 ATTCCCTCGACAGC-ACAGAATCCAATAATTCTTTCAGCGAA--AGATCGCTCAG-AATT 13023 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAGCGT 4785 |||||||| |||||| | || || |||||||| || | || | | || || | Sbjct 13024 CATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAG-AAATTGCTT 13082 Query 4786 TAAATA--ATTT-ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 ||| | |||| | || || || | || ||||| | || || ||||| || Sbjct 13083 CAAAAAGCATTTGGCGTTCTTTAATT---TCAGTGATATATCTATCAATAAGTAGTGAAT 13139 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCAT-CTAGCTTCT 4901 | ||||| |||||| | || |||| || ||||| | ||| | ||| || ||||| Sbjct 13140 AAGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCATAATA-CATCCTGGCTTCC 13198 Query 4902 GTTACTTGAACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 | || ||| | ||| | | ||||| || || | |||||||| | || ||||| ||||| Sbjct 13199 GGTATTTGTATTTCTCTGAGAAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCACT 13257 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGG---CTTAAGTTT 5017 || ||||| || || ||||||| || | | | |||| ||||| ||||| | Sbjct 13258 TGCAGCAAAGAATGCTAAAACAT---ATTTGATAAAATGTTTTTCAGGGTCTTTAAGACT 13314 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 || ||||| | ||| | | | | ||||| ||||||| | |||||| || ||||| Sbjct 13315 TTCCCAGTCTCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTC 13374 Query 5078 CGCTTTTTTGTACATAGACCAAATATC 5104 || ||||| ||||| |||||||| || Sbjct 13375 GGCCTTTTTATACATCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049303333981