Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq46 320 2e-82 seq37 172 8e-38 >seq46 Length=385502 Score = 320 bits (354), Expect = 2e-82 Identities = 1177/1815 (65%), Gaps = 34/1815 (2%) Strand=Plus/Minus Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCAGTT 76878 ||| || || || ||||||| ||| |||| || || |||||||| || | | || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938 || || || | | || | ||||| || |||| || || |||| | | | | Sbjct 13879 TGCAA-AATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGAC 13821 Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 76998 | ||||| || ||||| | || | |||||||| ||||||||||| ||| || ||| Sbjct 13820 CCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAA 13761 Query 76999 CTTGTTTGATATCATCTGGAAGGTT---TGTATTTTGAATGGAACCACCATCTGATATAA 77055 | ||||| || || | | | |||||||||| ||| || || || | Sbjct 13760 GCTCACGTATATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGA 13701 Query 77056 TTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAG 77115 | | | ||| | | ||||| ||| || ||| |||| | | || | ||| | Sbjct 13700 TATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCG 13641 Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG-TAAATATTACTGGTATAT 77174 |||| |||| || || ||||| | ||| ||||| ||| ||||| || || || Sbjct 13640 GATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAAT 13582 Query 77175 GGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCC 77234 || || | | || ||||| || |||||||| | ||| || || |||||||| || | Sbjct 13581 GGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGAT 13522 Query 77235 ACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCC 77294 | |||||| ||| | | ||||| | | ||| ||||||| || | | |||||| Sbjct 13521 ATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCAATCA 13462 Query 77295 CAAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351 ||||| |||| || ||| |||| | ||| |||||| ||| || ||||| ||| Sbjct 13461 CAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTGCA 13402 Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCC 77411 || |||| ||||||||| || ||||| | | |||| || || ||||| || || || Sbjct 13401 GGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCA 13342 Query 77412 AATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTA 77471 | ||| | ||||| || || || || | ||||| | | | ||| | | | | Sbjct 13341 AGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCC-TCCGA 13283 Query 77472 -TCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530 || | || || | | | ||||| || || | || |||| ||||| || | Sbjct 13282 CTCGTATGGTAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAA 13223 Query 77531 AGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTAT 77590 || | ||| || ||| || ||||| |||| || || |||||| || ||| || Sbjct 13222 TGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAAT 13163 Query 77591 AATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA 77650 |||||||| | ||| || || || || || || |||| ||| ||||||||| Sbjct 13162 TATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCAAA 13103 Query 77651 --TCTTCC-ATCTAT---AACAAACATGTTCAAAGCTA-TAGATGCTAGATTACAAACTG 77703 |||| || | | ||||||| | | || || | |||| || ||||||||||| | Sbjct 13102 CGTCTTGTTATTTTTGTCAACAAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACGG 13044 Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 | || || | || | | || | || || || || |||| ||||| | |||| Sbjct 13043 CAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATAG 12984 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGGA 77822 | |||| ||||| || || || || |||| ||| | || |||||| |||||| || Sbjct 12983 TACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCA-TCTTTATAACAAATAAATGGT 12925 Query 77823 GTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATA 77882 || || || ||||| || | | | || | ||| | | ||| || || |||| Sbjct 12924 GTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAA-GTTTCT-GCGCTT-TCATC 12868 Query 77883 GATTTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCC 77938 | ||| || |||| | | | ||||| | ||||||| | ||| ||||| || Sbjct 12867 GTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACC 12809 Query 77939 CCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTC 77998 ||||||||| | |||||| |||||||| |||||||| | | ||| || ||| | Sbjct 12808 CCAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCTTGATCCTT 12749 Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 | ||||| | ||| || |||||||| | ||| || ||| ||| ||||| || ||| Sbjct 12748 TTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATCT 12689 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 ||||| || || ||| || ||| || | |||||| | || |||| ||||| Sbjct 12688 CATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCA 12629 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCT 78178 ||||| | ||| ||||| || | || || || || || ||||| ||||| || Sbjct 12628 CGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCT 12569 Query 78179 GGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 || |||| ||||||||| | |||||| ||||| | ||||| || |||||||||| || Sbjct 12568 AGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTCCC 12509 Query 78239 AGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCAT 78298 |||||| ||| || | | ||||||||| | | | || | || ||||| | Sbjct 12508 TCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGCAGT 12449 Query 78299 CTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCAT 78358 |||| || ||||| | ||||| || | ||||| | ||| || || Sbjct 12448 CTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTTCTGG 12389 Query 78359 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGT 78418 || | || | |||||| ||||||||| | | || |||| |||||| | ||| Sbjct 12388 AATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAGTGT 12329 Query 78419 CGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTC 78478 || | |||||| ||||| |||||| || | | | |||||| |||| || | ||| Sbjct 12328 GGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAGCTTC 12269 Query 78479 TATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAA 78537 || || ||| | ||||| || | || ||||||| | |||||| |||||||| | Sbjct 12268 AATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTTTCCA 12210 Query 78538 CCGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596 | || || | ||||| || ||| || ||| |||||| ||||| || ||||||| Sbjct 12209 CAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAAATAA 12151 Query 78597 TTGTATGAAAAGTCT 78611 | ||| ||| ||| Sbjct 12150 TCATATTCAAAATCT 12136 >seq37 Length=17717 Score = 172 bits (190), Expect = 8e-38 Identities = 587/893 (66%), Gaps = 60/893 (7%) Strand=Plus/Plus Query 47820 TGATTATCTTC-TTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAA 47878 |||| ||||| |||| ||| ||||| |||||||||| || || | || ||||| Sbjct 12527 TGATCATCTTGGTTGAC-CATGACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCGAA 12585 Query 47879 AAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATT---AACTGC 47935 || ||||| ||||| | | ||| || ||||| |||| || ||||| |||| Sbjct 12586 GAAGTTAGTCTTGCCCTGGAGTGAAATGAGGTCCATCCAATCGAAAGGATTGGAAACT-- 12643 Query 47936 ATTATAAAtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATAT 47994 || || |||||| || |||| || | ||| | ||| || ||||| ||||| |||| Sbjct 12644 -TTGTAGATTTTTGGAACATCC-AAGGCGAAAAGTAATCTGTCAGCAACAAATTCAATAT 12701 Query 47995 ATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAA 48054 || ||| | | | ||||| || ||||| | ||| || |||| || ||||| Sbjct 12702 ATTGGGCCATAAGTCTCGAGTTCATACCAATAAGATCAACAGGAAGAGAATCACAAAGAA 12761 Query 48055 ACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTG 48114 | | | ||||| ||||| || ||| || |||| | | | ||| | Sbjct 12762 AGTTTCTTTCGACTTCAACAGCTTCTGATATGATT--TGTTGCACTCTAGGGACTGGTAA 12819 Query 48115 GATACAACAAATGT--TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCT 48172 || | || | ||| | | |||||| ||||||||| ||| || |||||||| | Sbjct 12820 TTTAAATTTAAGGGCCTTATATACTAAACAGGCAAAATCAGCATGTAGGCCTTCATCACG 12879 Query 48173 ACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAA 48232 ||||| | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| Sbjct 12880 GCTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 12939 Query 48233 TATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTC 48291 |||| | | |||| | |||||||| | || || || || || ||| | ||| || Sbjct 12940 AATTG-CACAAAAGCTACCAGAAAATAGAATTCCCTCGACAGCACAGAATCCAATAATTC 12998 Query 48292 TCTCTCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTC 48347 | || || || ||| | | || || || || |||||| || ||||||||| Sbjct 12999 TTTCAGCGAAA----GATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCCTTCTTC 13054 Query 48348 TTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt-----ttCATT--GCT 48400 || || || ||| || | |||||| | || |||| || Sbjct 13055 TTAAC---------TGCTTCAAT-------ATGAGAAATTGCTTCAAAAAGCATTTGGCG 13098 Query 48401 ATCTTTAACGTAAG-----TATCTATTAA-AAG-ACT--ATACATTTCGGAGTGAATATT 48451 ||||||| | || ||||||| || ||| | | ||| |||| || || | Sbjct 13099 TTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATAAGTTTCACTATGTATTTG 13158 Query 48452 TTCAATTGCCATCTGAAATCCGTAAAAACAT-CTCGCTTCTGTGATCTGTACCTC-CGTA 48509 ||||| | ||| ||||| | | || |||| || ||||| | || |||| || | | Sbjct 13159 CTCAATAGACATTTGAAAAGCAT-AATACATCCTGGCTTCCGGTATTTGTATTTCTCTGA 13217 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 ||||| | | ||||| || || | || || |||||||| |||||||| |||||||| Sbjct 13218 GAAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAA 13276 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTT 48629 |||| ||| ||||||| |||||| | | || | | |||||| | ||||| | Sbjct 13277 ACATATTTGATAAAATGTTTTTCAGGGTCTTTAAGACTTTCCCAGTCTCTAATATCATGA 13336 Query 48630 GATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 | ||| | |||||||| |||||||||||| || || ||||||||||| Sbjct 13337 CTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCGGCCTTTTTATACAT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668305048480