Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq46 266 5e-66 seq37 188 1e-42 >seq46 Length=385502 Score = 266 bits (294), Expect = 5e-66 Identities = 1167/1823 (64%), Gaps = 44/1823 (2%) Strand=Plus/Minus Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474 ||| || || || ||||||| ||| |||| || || |||||||| || || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534 | | || | | || | ||||| || |||| || || |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594 ||||| || ||||| | || | |||||||| ||||||||||| ||| || ||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 75595 TTGTTTGATATCATCTGGAAGATT-----TGTATTTTGAATGGATCCGCCATCAGATATA 75649 | ||||| || || |||| | |||||||||| | ||||| | | | Sbjct 13759 CTCACGTATATCCTCCGG--GATTGTAAGTATATTTTGAATA---CTGCCATTATTTGCA 13705 Query 75650 ATTGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGA 75706 || |||||| | | || ||||| ||| || || |||| | | || | | Sbjct 13704 ATGATATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAA 13645 Query 75707 TGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTG-TAAATATTACTGGT 75765 || ||||| || | || || ||||| | ||| || || ||| ||||| || || Sbjct 13644 TGCGGATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGT 13586 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 |||| || | | || ||||| || |||||||| | ||| || || || ||||| || Sbjct 13585 GAATGGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGG 13526 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 | | |||||| ||| | | ||||| | | ||| ||||||| || | | ||| Sbjct 13525 AGATATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCA 13466 Query 75886 ATCCCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCT 75942 ||| ||||| |||| ||| ||| |||| | ||| |||||| ||| || || || Sbjct 13465 ATCACAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACT 13406 Query 75943 AGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGC 76002 ||| || |||| |||||||||||| | || | ||||| || || || || || || Sbjct 13405 TGCAGGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGC 13346 Query 76003 CTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT-GCGCTTCA 76060 || | || | ||||| || || || || | ||||| || |||| || | Sbjct 13345 GTCAAGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTC 13286 Query 76061 AGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATA 76120 |||| | | || || | | | ||||| || || || || |||| ||||| Sbjct 13285 CGACT--CGTATGGTAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATC 13228 Query 76121 CCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATA 76180 || | || | ||| || ||| || ||| | |||| || || ||||| || Sbjct 13227 CCCAATGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACG 13168 Query 76181 TCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAA 76240 || || |||||||| | ||| || || || || || || |||| || |||| Sbjct 13167 TCAATTATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAA 13108 Query 76241 TCAAA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACAA 76294 ||||| | || | | ||| ||||| | ||| | ||||| || ||||||||| Sbjct 13107 TCAAACGTCTTGTTATTTTTGTCAACAAACTTTGGAAGGCCAATAGACGCCAGATTACAA 13048 Query 76295 ACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTG 76354 ||||| || || | ||| | | || | || || || ||||||| ||||| | Sbjct 13047 ACGGCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACA 12988 Query 76355 ATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAAC 76414 ||||| || | ||||| || || || || | || | || |||||| || ||| Sbjct 12987 ATAGTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAAT 12928 Query 76415 GGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATT 76474 || ||||| || ||||| || | | | || | ||| | | ||| || || | Sbjct 12927 GGTGTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAA-GTTTCT-GCGCTT-TC 12871 Query 76475 ATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATC 76530 || | ||| || || | | | | ||||| | | ||||| | | ||| ||||| Sbjct 12870 ATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATC 12812 Query 76531 TCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATC 76590 ||||||||||| | ||| || ||||||| ||| ||||| | | ||| || ||| Sbjct 12811 ACCCCAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCTTGATC 12752 Query 76591 TTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGT 76650 | | ||| | | ||| || |||||||| | ||| || ||| ||| ||||| || Sbjct 12751 CTTTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACA 12692 Query 76651 TCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATG 76710 ||| ||||| || || ||| || ||| || | ||||| | || |||| || Sbjct 12691 TCTCATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTG 12632 Query 76711 CCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATA 76770 ||| ||||| | ||| || || || |||| || || || || ||||| ||||| Sbjct 12631 CCACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATA 12572 Query 76771 TCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGT 76830 || ||||||| ||||||||| | |||||| ||||| | ||||| || | |||||||| Sbjct 12571 CCTAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGT 12512 Query 76831 TCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGC 76890 || |||||| ||| | | | ||||||||| | | | || | || ||||| Sbjct 12511 CCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGC 12452 Query 76891 CATTTTA--GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948 | ||| | || | ||| ||| ||||||||| | || || | ||| ||| Sbjct 12451 AGTCTTACTAATGTTTGCGCATTTAGTT--AATGTGTCAAAAATACCGTTTATTGAATCT 12394 Query 76949 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAC 77008 || || | || | |||||| ||||||||| | | || |||| |||||| Sbjct 12393 TCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAG 12334 Query 77009 AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACT 77068 | ||| || | ||||||||| || |||||| || | | | |||||| |||| | Sbjct 12333 AGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCA 12274 Query 77069 GCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127 ||||| ||||| ||| | ||||| || || || ||||||| | |||||| |||| Sbjct 12273 GCTTCAATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCT 12215 Query 77128 TTCTACAGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAA 77186 ||| ||| || || | ||||| || ||| || ||| |||||| ||||| || ||| Sbjct 12214 TTCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAA 12156 Query 77187 AATAGTTGTATGAAAAGTCTCTT 77209 |||| | ||| ||| ||| || Sbjct 12155 AATAATCATATTCAAAATCTTTT 12133 >seq37 Length=17717 Score = 188 bits (208), Expect = 1e-42 Identities = 577/877 (66%), Gaps = 35/877 (4%) Strand=Plus/Plus Query 46314 ATCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAA 46370 ||| ||||| |||| || ||||| |||| ||||| || || | || ||||| || Sbjct 12529 ATCATCTTGGTTGACCATGACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCGAAGAA 12588 Query 46371 ATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATA 46430 ||||| ||||| | | ||| || ||||| |||| || ||||| | ||| || || Sbjct 12589 GTTAGTCTTGCCCTGGAGTGAAATGAGGTCCATCCAATCGAAAGGATTGGAAACTTTGTA 12648 Query 46431 AAtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTT 46489 |||||| || |||| || | ||| | ||| || ||||| ||||| ||||| Sbjct 12649 GATTTTTGGAACATCC-AAGGCGAAAAGTAATCTGTCAGCAACAAATTCAATATATTGGG 12707 Query 46490 TCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTT 46549 ||| | | | ||||| || || || | || || |||| || |||||| | | Sbjct 12708 CCATAAGTCTCGAGTTCATACCAATAAGATCAACAGGAAGAGAATCACAAAGAAAGTTTC 12767 Query 46550 GTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA 46609 ||| | ||||| || ||||| || |||| | | | ||| | | | Sbjct 12768 TTTCGACTTCAACAGCTTCTGATATGATT--TGTTGCACTCTAGGGACTGGTAATTTAAA 12825 Query 46610 TCAAATGT--TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | ||| | | |||||| ||||||||| ||| ||||||||||| | ||||| Sbjct 12826 TTTAAGGGCCTTATATACTAAACAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAAT 12885 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 12886 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 12944 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || || || ||||| |||| | | || ||| || Sbjct 12945 CACAAAAGCTACCAGAAAATAGAATTCCCTCGACAGCACAGAATCCAATAATTCTTTCAG 13004 Query 46787 CGTAA-CTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAA 46845 || || | || ||| || ||||| | ||||| || ||||| ||||| || Sbjct 13005 CGAAAGATCGC-TCAGAATTCATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAAC---- 13059 Query 46846 GGCATTGTTTCTATA---------GCATTAAAGAGAAAGtttttttCATCACTATCTTTA 46896 || ||| ||| || | ||| || | | ||| | | | || | Sbjct 13060 -----TGCTTCAATATGAGAAATTGCTTCAAAAAGCATTTGGCGTTCTTTAATTTCAGTG 13114 Query 46897 ACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGA 46956 | |||| |||| || | || ||| |||| ||| || | ||||||| ||| ||| Sbjct 13115 ATATATCTATCAATAAGTAGTGAATAAGTTTCACTATGTATTTGCTCAATAGACATTTGA 13174 Query 46957 AATCCGTAAAAACAT-CTTGCTTCAGTAATCTGTACCTCTGT-ACAAAATCGTTCAGACA 47014 || | | || |||| || ||||| | || |||| ||| | | ||||| | | | || Sbjct 13175 AAAGCAT-AATACATCCTGGCTTCCGGTATTTGTATTTCTCTGAGAAAAT-TTACTGCCA 13232 Query 47015 AATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAAT 47074 | || || | || || |||||||| |||||||| ||||| || |||| ||| ||||||| Sbjct 13233 AGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAAT 13292 Query 47075 ATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTT 47134 ||||||| | | || | | |||||| | ||||| | | ||| | ||||| Sbjct 13293 GTTTTTCAGGGTCTTTAAGACTTTCCCAGTCTCTAATATCATGACTCAGATCAATTTCTT 13352 Query 47135 CAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACAT 47171 ||| ||| ||||| || || || ||||||||||| Sbjct 13353 CAGTAACCCAAAATGATGCTTCGGCCTTTTTATACAT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933892034240