Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq45 116 9e-21 >seq45 Length=133594 Score = 116 bits (128), Expect = 9e-21 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||||||||| | || | ||| | |||||||||||||| ||||||||||| | | || Sbjct 54829 CCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGT 54770 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 ||| ||||| |||| ||||| || || ||||| | | || || || | | ||| Sbjct 54769 TCTACCATCCTCTAATTGCTTT--CCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATT 54712 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| |||||||| ||| || ||| |||| | | |||||| || ||||| Sbjct 54711 CCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACTTCC 54652 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||| ||||| || || || | |||||| || || | |||||| || Sbjct 54651 AAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||||||||| | || | ||| | |||||||||||||| ||||||||||| | | ||| Sbjct 55057 CCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 54998 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| ||||| |||| ||| || || ||||| | | || || || | | || || Sbjct 54997 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCC 54938 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| |||||||| ||| || || |||| | | |||||| ||| ||||| | Sbjct 54937 CTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAA 54878 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || ||||| | |||||| ||||| | |||||| Sbjct 54877 AGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | || | ||| ||||||||||| ||||||||||| | | |||| Sbjct 55284 CTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTT 55225 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| |||| ||| || || ||||| | | || || || | | |||||| Sbjct 55224 CTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCT 55165 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| ||| || ||| |||| | | |||||| ||| ||||| | | Sbjct 55164 TCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAA 55105 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | ||||| ||||| | |||||| Sbjct 55104 GTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819957350247