Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq45 192 1e-43 seq6 152 1e-31 seq37 98.7 2e-15 >seq45 Length=133594 Score = 192 bits (212), Expect = 1e-43 Identities = 184/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | | ||| | |||||| || |||||||| |||||||| |||| Sbjct 54835 ACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGA 54776 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||||||| ||| || || |||||||||||||||||||| ||| || Sbjct 54775 GAGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 54716 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| |||||||| || || | |||||||| || |||| ||| || Sbjct 54715 AATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAAC 54656 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATAT 283107 ||| | |||||| ||||| || |||||||||||||| || |||||||| ||| ||| Sbjct 54655 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTCGTAT 54600 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | | ||| | |||||| || |||||||| |||||||| |||| Sbjct 55063 ACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGA 55004 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||||||| |||||| || |||||||||||||||||||| ||| || Sbjct 55003 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 54944 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||| |||||||| || ||| | || || || || |||| || || Sbjct 54943 TATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAAC 54884 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | |||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 54883 TTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 Score = 187 bits (206), Expect = 5e-42 Identities = 163/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||||| |||||||| |||| || || | |||||||||| |||| Sbjct 55266 TGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGT 55207 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||||||||| ||| ||||| || ||||| ||||| |||||| Sbjct 55206 TTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTT 55147 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | |||||||| || |||| || ||||| | |||||| ||||| || ||| Sbjct 55146 GCCTTAACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAAGTGATGGTCTTTCCTGTC 55087 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| |||||||| Sbjct 55086 AAGGTCTTAACGAAAATCTGCAT 55064 >seq6 Length=322908 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| ||||| |||| || || | |||||| || | ||| || || |||||| Sbjct 207047 TCCTTCTGGATATTGTAATCAGATAGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAG 206988 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| ||||| ||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 206987 ATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTC 206928 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| ||||||| ||| ||||| | ||||| ||||| || || | ||| ||||| Sbjct 206927 TCAATAGTATCCGAAGGTTCAACTTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACA 206868 Query 283089 AATATCTGCATTTT 283102 || || ||||| || Sbjct 206867 AAAATTTGCATCTT 206854 >seq37 Length=17717 Score = 98.7 bits (108), Expect = 2e-15 Identities = 293/438 (67%), Gaps = 23/438 (5%) Strand=Plus/Minus Query 229975 TGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTCTGCGCCATCTTTTGGCT-ACGCAA 230032 ||||| || ||||| ||||| || || || || || || || || |||||||| | || Sbjct 12984 TGTGCTGTCGAGGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTTAAAAAA 12925 Query 230033 CAAGGGCGTCATGCCCGGGCTCGGTCTGTCGAACGAATTCATCAGCAGGGACGAAGGTCT 230092 | || | | ||||| || ||| | || || ||| | || ||| | || ||||| || Sbjct 12924 CGTGGACTT-ATGCCTGGACTCACATTTTCTAATGAACTTATTAGCCGTGATGAAGGCCT 12866 Query 230093 TCACCAGCAATTTGGCGAGGTCTTGTATTCGAAGC---TAAATAACAAACTACCTTTCGA 230149 || | |||| | || | |||| | || ||||| ||| |||| || Sbjct 12865 ACATGCTGATTTTGCCT--GTTTAGTATATAAGGCCCTTAAATTT-AAATTACCAGTCCC 12809 Query 230150 AACGGTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGC 230209 | ||| |||||||| | |||||| |||| | |||| | || |||| || | Sbjct 12808 TAGAGTGCAACAAATCATATCAGAAGCTGTTGAAGTCGAAAGAAACTTTCTTTGTGATTC 12749 Query 230210 TATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGT 230269 | ||||| |||||| || ||||| | || |||| |||||||| ||||| || Sbjct 12748 TCTTCCTGTTGATCTTATTGGTATGAACTCGAGACTTATGGCCCAATATATTGAATTTGT 12689 Query 230270 AGCTGATCG--TATTTTCGTGGCGCTAGG--GTACGAGAAAGTGTATAAC---TCCAAGA 230322 ||||| | || ||| | || || || || | | ||| | || || ||||| Sbjct 12688 TGCTGACAGATTACTTT--TCGC-CTTGGATGTTCCAAAAA-TCTACAAAGTTTCCAAT- 12634 Query 230323 ACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGC 230382 || |||| || ||||| ||||||||||||||||| || |||||||||||||||||| Sbjct 12633 --CCTTTCGATTGGATGGACCTCATTTCACTCCAGGGCAAGACTAACTTCTTCGAAAAGA 12576 Query 230383 GTGTCAGCGATTATCAAA 230400 | ||| | || ||||||| Sbjct 12575 GAGTCGGAGAATATCAAA 12558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738435553278