Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq37 219 4e-52 >seq37 Length=17717 Score = 219 bits (242), Expect = 4e-52 Identities = 523/773 (68%), Gaps = 57/773 (7%) Strand=Plus/Plus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||||||||| || || | ||||||| || || ||||| |||| | ||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTTAA 23336 |||| |||| || ||||| ||| | | | || | ||| | || || | || Sbjct 12618 CCATCCAATCGAAAGGATTGGAA--ACTTTGTAGATTTTTGGAACATCCAAGGCG---AA 12672 Query 23337 AAGC---CTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGTTTATACCTA 23392 ||| || || || ||||||||||||||||| ||| || || |||| ||||| | Sbjct 12673 AAGTAATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACCAA 12731 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTT--TTCAATGGAAACAGCATCTTT 23450 | || | || |||| | |||| | ||||| ||||| ||| | |||||| ||| Sbjct 12732 TAAGATCAACAGGAAGAGAATCACA-AAGAA-AGTTTCTTTCGACTTCAACAGCTTCTGA 12789 Query 23451 AATTATTTGAACAATAACTTCTTCACTAGG---TGGATATTTTAAATA-------CTTAA 23500 || ||||| || | ||||| ||| || ||||||| |||| Sbjct 12790 TATGATTTG---------TTGCACTCTAGGGACTGG-TAATTTAAATTTAAGGGCCTTAT 12839 Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 | | |||||| ||||||||| ||||||||||||||| | ||||| | ||||||||||| Sbjct 12840 ATACTAAACAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAA 12899 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCG 23619 |||| | ||| ||||| | ||| |||||||||| |||||| |||||| |||| | | || Sbjct 12900 ATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCA 12958 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTA-CCAAATGTTGCATT 23678 ||||| | ||| ||||| ||||| || | | || | | | | ||| | || Sbjct 12959 GAAAATAGAATTCCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGC--- 13015 Query 23679 ATAATCAGAA---ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGT 23735 |||||| |||||||| ||| ||| | |||||| || || ||||| Sbjct 13016 ----TCAGAATTCATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATG 13071 Query 23736 TTCAATTGCTTTTAAGAGAAAAGTTT---TTTCTTCATTATCTGTTATATATGTATCAAT 23792 |||||||| || || | ||| ||||| | | || || |||||| ||||||| Sbjct 13072 AGAAATTGCTTCAAAAAGCA---TTTGGCGTTCTTTAATTTCAGTGATATATCTATCAAT 13128 Query 23793 TAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 |||| ||| ||||| ||| || | ||||||| || ||||| ||| || ||| Sbjct 13129 AAGTAGTGAATAAGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCAT-AATACA 13187 Query 23853 T-CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAA 23911 | || ||||| | | ||| | || | | ||| || || || ||||| |||||| Sbjct 13188 TCCTGGCTTCCGGTATTTGTATTTCTCTGAGAAAATTTACTGCCAAGTTTTCCATAACAA 13247 Query 23912 TACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA 23964 |||||||||| ||||||||||| || | ||||||||| ||||||||| ||||| Sbjct 13248 TACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCA 13300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487628439800