Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq45 105 5e-18 seq6 105 5e-18 >seq45 Length=133594 Score = 105 bits (116), Expect = 5e-18 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 44097 ATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGA 44156 ||| || || |||||| ||||| |||||||| || | ||| | ||| ||| ||||| | Sbjct 55304 ATTGTTTTTACATTCCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAA 55245 Query 44157 TGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCT 44216 |||||||||| | ||| | | || || | || || || |||||||||||||| | Sbjct 55244 TGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTT 55185 Query 44217 GCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTG 44275 | ||||| | || | |||||||| || ||||| ||| | || ||| | || || Sbjct 55184 GTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTT-TGCCTTAACATTCTCGATAGTA 55126 Query 44276 TCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 || | | || || || | || || |||||||| || | |||||| ||||| || ||| Sbjct 55125 TCTGAAGGCTCAACTTCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGC 55066 Query 44336 AT 44337 || Sbjct 55065 AT 55064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || |||||||| || | || | || ||| ||||| ||||||||||| Sbjct 54838 CATACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATC 54779 Query 44167 GGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||| || || | || || | ||||| || |||||||||||||| || ||||| Sbjct 54778 AGAGAG--GGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCA 54721 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | |||||||| || ||||| ||| | || ||| | || || || | | Sbjct 54720 GGTGGAATTCCTTCCTTATCTTGAATCTT-TGCCTTAACATTCTCGATAGTATCTGAAGG 54662 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || |||||||| || | ||||| || || || ||||| Sbjct 54661 TTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 54608 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || |||||||| || | || | || ||| ||||| ||||||||||| Sbjct 55066 CATACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATC 55007 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || || | || || || |||||||||||||| || ||||| | Sbjct 55006 AGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGG 54947 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||| | || |||| | || || || | | | Sbjct 54946 TGGTATCCCCTCCTTATCTTGAATCTT-TGCCTTAACGTTCTCAATTGTATCTGAAGGCT 54888 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || ||||||||||| | ||||| ||||| || ||||| Sbjct 54887 CAACTTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq6 Length=322908 Score = 105 bits (116), Expect = 5e-18 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169 || ||||| |||||||| || | ||| | ||| |||||| ||||| |||||||| | Sbjct 207083 CCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGAT 207024 Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| || | || |||| ||||| || ||||||||||||||||| ||||| | || Sbjct 207023 AGAGTTCT-GC-CATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAG 206966 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | || ||||| ||| ||||| ||| | | ||| | || || || | | ||| Sbjct 206965 GAATGCCCTCCTTATCCTGGATCTT-TGCCTTTACATTCTCAATAGTATCCGAAGGTTCA 206907 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || ||||| || || || || || || || |||||||| Sbjct 206906 ACTTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCAT 206857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990149919169