Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 233 2e-56 >seq2 Length=1262744 Score = 233 bits (258), Expect = 2e-56 Identities = 579/861 (67%), Gaps = 27/861 (3%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||||| |||||||||||| ||||| || ||||| |||| | ||||||| | Sbjct 87569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 87628 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTA--TTTATCGCATC-CCAATTCCAACA 16061 |||| ||||||||||||| ||| | ||| ||| | | || |||| | || | Sbjct 87629 CCATCCAATCAAAAGGATTA---GAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAA 87685 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTATT 16120 ||||||||| || |||||||| ||||| || ||| || || | | ||||| || || Sbjct 87686 GTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATA 87744 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | | |||||| | | || | ||| ||| |||| | | ||| ||||| |||| Sbjct 87745 AGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGATA 87802 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAA---TAAGTG-TTTAAACATTATACA 16236 || | || ||| ||| | | | ||||| |||| | |||| | |||| ||| Sbjct 87803 TGATTTGTTG-TACTCTAGG-AGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACA 87860 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||||||| ||| | ||||| || | ||| || | || || |||||||| || || Sbjct 87861 AGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 87920 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| ||||| |||||||||| |||||| || || ||| ||||||||| | || Sbjct 87921 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 87980 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||| || ||| ||| | || ||| | | | || | | ||| || Sbjct 87981 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAA--TTC-AT 88037 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| | ||||| | |||||| | ||| ||| | || | ||||| | || Sbjct 88038 CCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAA- 88096 Query 16477 TAAATAAttt--ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 | | |||| |||||| | || |||||| |||| || ||||| ||| || Sbjct 88097 -AGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTT 88155 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||| || | || || | || |||||| ||||| | ||||||||| | |||| Sbjct 88156 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 88215 Query 16595 TGTACTTCAGAGTAA--AACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||| ||| ||| || || ||||||||||||| |||| || ||||| || || | Sbjct 88216 TGTATTTC--TCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAG 88273 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 |||| || || | | | ||| ||||||| | |||| ||| ||| || ||| | Sbjct 88274 CAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAAT 88333 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | | ||||| || ||| | ||||| | |||||| || || |||| |||| Sbjct 88334 CTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTTT 88393 Query 16773 TATACATTTTCCATATGTCTT 16793 |||||||| ||| || |||| Sbjct 88394 TATACATTGACCAAATATCTT 88414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511895934800