Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 250 2e-61 >seq2 Length=1262744 Score = 250 bits (276), Expect = 2e-61 Identities = 592/872 (68%), Gaps = 33/872 (4%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||||||| |||||| ||||| || |||||||||||||||| ||||| ||| | Sbjct 87569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 87628 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 |||| |||| || ||||| | | | | ||| | | | | | || | || Sbjct 87629 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 87688 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGT 13548 |||||||||||| ||| ||||||||||| | ||| || || | |||||||||| || || Sbjct 87689 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAAGA 87747 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 | ||||||| | | | ||| | | |||| | ||||| || ||| || Sbjct 87748 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 87807 Query 13609 ATCTTAATAATGTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACAC 13662 | || || | | || || || | |||| || |||| | |||||||| Sbjct 87808 -TGTTG-TACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAA 87861 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||||||||| ||| || || ||||| | |||||||||||| || |||||||| | ||| Sbjct 87862 GCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCA 87921 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781 ||||| | ||| |||||||| | |||||| |||||| | || | | || ||||| | || Sbjct 87922 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAAT 87980 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATAT 13841 ||| ||||| ||| || | || | || ||| |||| ||| | || || Sbjct 87981 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATTC---AT 88037 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| | |||||||| | ||| ||||| | | || || ||||| | || Sbjct 88038 CCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAAA 88097 Query 13902 TAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 | || | | | |||||| | | ||| ||| ||||||||||||| ||| ||| Sbjct 88098 GAGCATTTGACGT-TCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 88156 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 || ||||| | ||| |||| || |||||| ||||| | ||||||||| | || Sbjct 88157 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATTT 88216 Query 14021 GTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 ||| || | | |||| || |||| |||||||| |||||||||||||||| || ||| Sbjct 88217 GTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGCA 88275 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCAA 14136 || ||||| || | | ||| ||||| || || |||| | || || ||| |||| Sbjct 88276 AAGAATGCTAAAACATATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCAA 88332 Query 14137 TCGGCTA-AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA-GCGACAGCTT 14194 || ||| ||| | | ||||| | ||| || | | || ||||| | || |||||| Sbjct 88333 TC-TCTAGTATCTTGACTTAGATCAATTTCTTC-AGTAACCCAAAACGACGCTTCAGCTT 88390 Query 14195 TTTTATACATTACCCATATTTCTTTATATAAT 14226 ||||||||||| ||| || |||||| |||| Sbjct 88391 TTTTATACATTGACCAAATATCTTTAATTAAT 88422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588692317520