Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 163 2e-35 >seq2 Length=1262744 Score = 163 bits (180), Expect = 2e-35 Identities = 573/871 (66%), Gaps = 43/871 (5%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||||||||| | |||||| ||||| || ||||| ||||| |||| | |||||| | Sbjct 87569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 87628 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT----ACACCCTAATTCTAGT 12976 |||| |||| |||||||| ||| | ||| |||| | | || || | | Sbjct 87629 CCATCCAATCAAAAGGATTA---GAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAA 87684 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTAT 13035 | ||||| ||||||||||| || || || || ||| || || | | ||||| || || Sbjct 87685 AGTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAAT 87743 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | | ||||| | || || | ||||||| |||| | ||||| ||||| | | Sbjct 87744 AAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGA- 87800 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGG-----ATTTGA---TAGATGCTTAA-ACAT 13146 |||| | | || || ||||| |||| |||| | || |||| | | || Sbjct 87801 TATGATT--TGTT--GTACTCTA--GGAGCTGGTAATTTAAATTTAAGGGCTTTATATAT 87854 Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 | ||| ||||||||| || | |||||||| | ||| || || || || |||||||| Sbjct 87855 TAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGT 87914 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaa 13266 || || |||||||| || |||||||||| |||||| || ||| ||| ||| ||||| Sbjct 87915 GAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAA 87974 Query 13267 aaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACT 13326 | ||||||||||| || || | || | |||||| || | | | | | | Sbjct 87975 TAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATT 88034 Query 13327 CTCTATCCACTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTC-ATATTTTCTATT 13384 | ||||| || | ||||| | |||||| || |||| || ||| |||| ||| Sbjct 88035 C---ATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGC--TTCAATATGAGAAATT 88089 Query 13385 GCGTTAAATAAATAAttt--ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 || | || | | |||| ||| ||| | || |||||| |||| || | ||| Sbjct 88090 GCTTCAA--AGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATG 88147 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 ||| |||| ||| || | ||| || | ||||| ||| ||||| | |||||| | Sbjct 88148 AATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTT 88207 Query 13503 CTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 | | || || | ||| | |||| || ||||||||||||| |||| || || ||| Sbjct 88208 CCGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCA 88266 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAACTT 13620 || |||||||| || || | | | || ||||| | | |||| | | | | |||| Sbjct 88267 CTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTT 88326 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 | ||||||| | ||||| || ||| | || ||| |||||| || || | Sbjct 88327 T-CCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTC 88385 Query 13681 AGCCTTCTTATACATCATCCATATATCCTTA 13711 ||| || |||||||| ||| ||||| ||| Sbjct 88386 AGCTTTTTTATACATTGACCAAATATCTTTA 88416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982305453236