Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 136 6e-28 >seq3 Length=1176575 Score = 136 bits (150), Expect = 6e-28 Identities = 194/270 (72%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||| || |||||||||||||| ||||| |||||||| ||| Sbjct 1126894 GCCAAGCGTCATCGTAAGGTTCTCCGTGATAACATCCAAGGTATCACAAAGCCAGCCATC 1126835 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | ||||| || || ||| | || | ||| |||| ||||| | Sbjct 1126834 CGTCGTCTCGCACGTAGAGGTGGTGTTAAACGTATTTCCGCCTTGATCTACGAAGAAGTC 1126775 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| |||||| ||| | | ||||| || | |||||| | ||| || ||| Sbjct 1126774 AGAGGTGTATTGAAGGCATTCTTAGAAACCGTAATTAAGGATGCTGTTACCTACACTGAG 1126715 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 | || | ||||||||| || || | |||||| | || |||| | || | |||||| Sbjct 1126714 TATGCCAGACGTAAGACCGTTACTGCTATGGATGTAGTTCATGCTCTTAAGAGACAAGGC 1126655 Query 16673 CGTAAGA-TTTAT--GGTTTTGGAAGTTAA 16699 |||| ||||| |||||||| ||||| Sbjct 1126654 ---AAGACTTTATACGGTTTTGGTGGTTAA 1126628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075183542474