Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7 134 1e-26 >seq7 Length=814761 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | ||||| || | || Sbjct 515635 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 515694 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || ||||| | ||| || || ||||| || |||||||| || Sbjct 515695 GATACAATTGAGAATGTTAAGGCAAAGATTCA-AGATAAGGAAGGAATCCCACCTGATCA 515753 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || ||||||||||| |||| | | ||| | |||||||| Sbjct 515754 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 515813 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| ||||| |||| ||||| || || || ||||| || Sbjct 515814 CATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGTGG 515861 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| | ||||| ||| | || Sbjct 515863 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 515922 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || ||||| | ||| || || || || || |||||||| || Sbjct 515923 GATACAATTGAGAATGTTAAGGCAAAGATTCA-AGATAAGGAGGGAATCCCACCTGATCA 515981 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || ||||||||||| |||| | | ||| | || ||||| Sbjct 515982 ACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 516041 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || |||||||||| | || || ||||| || Sbjct 516042 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGAGGTGG 516089 Score = 107 bits (118), Expect = 2e-18 Identities = 114/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 ||||| | ||| || || ||||| || |||||||| ||||| || | || ||||| || Sbjct 516684 GCAAAGATTCAA-GATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGG 516742 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 ||||||||||| |||| | | ||| | |||||||| ||||||||||| ||||| | Sbjct 516743 AAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTT 516802 Query 25199 ACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| || || || ||||| |||| Sbjct 516803 ACACTTAGTCCTGAGACTTAGAGGCGGAA 516831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327904938670