Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7 138 8e-28 seq1 125 5e-24 >seq7 Length=814761 Score = 138 bits (152), Expect = 8e-28 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | ||||| || | || || |||||||| ||||||||||| | Sbjct 515861 CCACCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 515802 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 515801 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 515742 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 515741 ATTCCTTCCTTATCTTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 515683 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || || || || || || ||||||| ||| || |||||||| |||||||||| Sbjct 515682 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTG 515630 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || |||||||| | ||||| |||||||| |||||||| || | Sbjct 516089 CCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 516030 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | || ||||| ||||| || ||| Sbjct 516029 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGG 515970 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| ||||| || ||| ||||| || ||| | || || ||||| | || || Sbjct 515969 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGCTCAAC 515911 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||||| ||| || || ||||| |||||| Sbjct 515910 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 515862 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | ||||| || | || || |||||||| ||||||||||| | Sbjct 516829 CCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 516770 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 516769 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 516710 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTT 15097 ||||||||||| || ||| ||||| || Sbjct 516709 ATTCCTTCCTTATCTTGAATCTTTGCCTT 516681 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||| || || | |||||||| ||||| || ||| ||||||||||| || ||| || Sbjct 516678 TTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTT 516619 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| | || || ||||| | ||| || || || || || || || |||| Sbjct 516618 TGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTG 516560 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTTG 15181 ||| ||| || |||||||| |||||||||| Sbjct 516559 TCAAAGTCTTAACAAAAATCTGCATATTTG 516530 >seq1 Length=1288507 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | |||||| |||||||| | || || || || || || ||||| || Sbjct 547518 CCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 547577 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| ||||| || ||||| | |||| ||||||||| || ||| Sbjct 547578 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 547637 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || ||||| || || ||||| ||| ||| | || ||||||||| | ||| || Sbjct 547638 ATACCCTCCTTATCCTGGATCTTTGCCTTT-ACATTCTCAATAGTATCGGAAGGTTCAAC 547696 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || ||||| | |||||| |||||||||||||| || Sbjct 547697 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 547747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391921597130