Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=1262744 Score = 143 bits (158), Expect = 3e-29 Identities = 1112/1759 (63%), Gaps = 66/1759 (4%) Strand=Plus/Plus Query 111604 TGGAAACCCCACAGTACATGTTC--ATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 |||||| ||||| |||| ||| ||||||||| | ||||| ||| | | ||||| Sbjct 369865 TGGAAAGACCACA--ACATCTTCTGATGCGGGTCTCTTGTGGTATTCATTGTGGTGATAT 369922 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGG-TATGTTCATCCACGCAACAC 111720 ||| ||| | || ||||| || | | || | ||| || || | ||||||| Sbjct 369923 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTTACTC-ATGCAACAC 369981 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATT--GC 111778 | || ||||| || | || || ||| |||| |||||||| |||||| ||| | | Sbjct 369982 CCACACTCTTTAATTCAGGCACTCCACGACCTCAAATGTCATCTTGTTTT-TTACTCAGG 370040 Query 111779 AAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTC 111838 | | || || ||||||| || || || | | ||| || ||| |||| || | || Sbjct 370041 ATTCCAGAAG-ATTCAATAAACGGTATCTTTGACACACTAACTAAATGCGCAAACATTAG 370099 Query 111839 AAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTA 111897 ||| || |||||| | ||| || | | || | |||| ||| || | || Sbjct 370100 TAAGACTGCGGGTGGTCTTGGGGTGGCAGTGAGTAATATTAGAGG-AACTGGTTCATATA 370158 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || |||| |||||||| ||| |||| | ||||| ||||| ||||| | ||| | || Sbjct 370159 TTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACA 370218 Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTG 112014 | || | ||| | | |||| ||| | || || || | || ||| | ||| | | Sbjct 370219 CTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGG 370278 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 |||| ||||||| ||| | | ||||| |||| | | || || || | || | Sbjct 370279 AGCCGTGGCACGTTGATGTTGTAGAGTTTATTGAAATCAGGAAGAATCACGGAAAGGAAG 370338 Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 || | | || ||||||||||| | || || ||| |||| ||||| |||||| | |||| Sbjct 370339 AGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAG 370398 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCCGGTCTCTCCGAT 112193 ||||| || | ||||| |||| | || ||||| || ||| || | ||| Sbjct 370399 TTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGAT 370457 Query 112194 GCCGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | ||| || || ||| |||| || || | |||| ||| || || | || | | Sbjct 370458 GTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAA 370515 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACT 112310 ||| || ||| || || | | || ||| | || |||||| ||||| Sbjct 370516 GGAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACG 370574 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTT 112369 || ||||||| ||| ||| ||||| | ||| || | || ||||| || || ||||| Sbjct 370575 GGGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTT 370633 Query 112370 GGGTGTGATCAAGAGTTCC----AACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 || || | | ||| | ||| | || ||||||||| | |||| || || | Sbjct 370634 GG----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCACGG 370689 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485 | || || || ||||| || || || || | || || || | || ||| | | | Sbjct 370690 ACGAAGTTGCCGTCTGTAATCTGGCGTCTATTGGCCTTCCAAAATTCGTTGATAAAAATA 370749 Query 112486 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||||| ||||||| ||| || | | ||||||||||| | || | || | | Sbjct 370750 ACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGA 370809 Query 112546 ACAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 | | | | ||||| | || ||| || | | ||| || | ||||| ||| | | Sbjct 370810 ATAAATTGATTGACGTTGGATATTATT--CTCTCAAAGAGTG-TAAAAAATCGAATTTAA 370866 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA-TGTAT--TCATTCTTTGTC 112659 |||| |||||| | || | || | ||||| ||||| || ||| | | || ||| || Sbjct 370867 GACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGTTTTATGATGCTTCGTA 370926 Query 112660 GCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGT 112719 | | | || || || | ||| ||| | | ||| | || ||||| || | Sbjct 370927 TGC---CGTACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATTTTTGAAGTTATCT 370983 Query 112720 ATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCT 112779 || | || ||||| || || || | ||| | ||||| | || ||||| ||||| | Sbjct 370984 ATTATGCAGCTCTCGACGCTAGCTGTGAGCTTGCAGAAAAATACGGGCCATACGAAACAT 371043 Query 112780 TTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGAC 112837 | ||||| || || | | |||| || |||||||||||||||| | || | || Sbjct 371044 ATTCCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACAC 371100 Query 112838 CAAGCT----TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 112893 || || | | || ||||| || || || | || | | ||| ||| Sbjct 371101 CAGACTCTGGACTTTGTGATTGGGATTTGCTTAAAGATAGGATTTCCAAACATGGTATTC 371160 Query 112894 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 112953 |||| ||| || || | |||||||||||||| ||||| | ||||| || ||||| | Sbjct 371161 GTAATTCTCTATTAATATCTCCAATGCCAACAGCATCCACTTCGCAAATTTTAGGTAACA 371220 Query 112954 ATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGT 113013 |||| | ||||| || | || ||||||| |||| | ||| || | || |||| Sbjct 371221 ATGAGAGTTTTGAGCCATTTACCTCGAACATTTATCATCGTAGAGTACTATCTGGTGAGT 371280 Query 113014 TTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG--TCCAA 113071 | | | || || |||| | | |||| | |||| |||| | ||| | | Sbjct 371281 TCTTTGTAGTAAATCCGCATTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATA 371340 Query 113072 GG-ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTC 113130 || || | || || | || || || ||| |||||||||||| | |||| Sbjct 371341 GGCTTAAGCAGAATATTAT--TGCAA-ATAATGGCAGCATTCAAAATATACTTACAATTC 371397 Query 113131 CAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTG 113190 | || || || || | || || || |||||||| ||| ||| || |||| Sbjct 371398 CGGAAGATATACGCGAGCTTTATAAGACTGTATGGGAAATTAAGCAAAAGACAGTAATTG 371457 Query 113191 ACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC--AT 113248 | ||||| |||||| | |||| | || |||| ||| | |||| |||| || Sbjct 371458 ATATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAA--CATTCATAT 371515 Query 113249 GGAAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 113307 ||||| | | ||| || | ||| | || |||||||| | || ||||||| || |||| Sbjct 371516 GGAAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTC 371574 Query 113308 TCAAAACGGGGATGTATTA 113326 | ||||| || || ||||| Sbjct 371575 TAAAAACAGGCATTTATTA 371593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742260332960