Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7 167 5e-36 seq1 152 1e-31 >seq7 Length=814761 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| || | ||| | |||||||||||||||||| |||||||| | ||||| Sbjct 515856 TCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 515797 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | || || ||||| ||||| | |||||||| || || || || || Sbjct 515796 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCC 515737 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||||||| ||| ||| || |||||||| || || ||| ||| ||||| | Sbjct 515736 TTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAA 515677 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||||||||| || || || | ||||| Sbjct 515676 AGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 515635 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | || | ||| |||||||||||||| ||||| || | ||||| Sbjct 516084 TCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGT 516025 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | || || ||||| ||||| | |||||||| || || || || || Sbjct 516024 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGGATTCC 515965 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || |||||||| ||| ||| || |||||||| || || ||| || ||||| | Sbjct 515964 CTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAA 515905 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||||||||| || ||||| | ||||| Sbjct 515904 AGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 515863 Score = 116 bits (128), Expect = 8e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| || | ||| | |||||||||||||||||| |||||||| | ||||| Sbjct 516824 TCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 516765 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | || || ||||| ||||| | |||||||| || || || || || Sbjct 516764 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCC 516705 Query 195039 TTCTTTGTCTTGAATTTTT 195057 ||| || |||||||| ||| Sbjct 516704 TTCCTTATCTTGAATCTTT 516686 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| ||||| | |||||||| || || || || ||||| || |||||||| ||| Sbjct 516677 TTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTT 516618 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || |||||||| || || ||| ||| ||||| | || | |||||||||||| Sbjct 516617 GCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 516558 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || | ||||| Sbjct 516557 AAAGTCTTAACAAAAATCTGCAT 516535 >seq1 Length=1288507 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| || || | || | ||||||||| || || |||||||| || | ||||| Sbjct 547523 TCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGT 547582 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || || ||||| || || ||||| || |||||||| || Sbjct 547583 TCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACC 547642 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || ||| ||| || |||||||| || || ||| ||| ||||| | Sbjct 547643 CTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAA 547702 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| |||||||| || || | |||||| Sbjct 547703 TGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 547744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481344125806