Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 280 2e-70 >seq2 Length=1262744 Score = 280 bits (310), Expect = 2e-70 Identities = 1184/1865 (63%), Gaps = 48/1865 (3%) Strand=Plus/Minus Query 47018 TAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAA 47077 ||||||||| || || || |||| |||| |||| ||||| ||||||||| | ||| Sbjct 371597 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 371538 Query 47078 TTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGC 47137 || | | | ||| | | |||||||| || | |||||| ||| || | ||| Sbjct 371537 CTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGG 371478 Query 47138 ACCTCTATCAGCTGCCATATCTAAAATAACCCT-TTGTGGT--ATCTCCCATACTGTTTT 47194 ||| ||||| || |||||||| ||| || | || || | || |||||||| || || Sbjct 371477 ACCCCTATCTGCAGCCATATC---AATTACTGTCTTTTGCTTAATTTCCCATACAGTCTT 371421 Query 47195 ATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttc 47251 ||||| | || ||||| || | || |||||||||| || ||| | Sbjct 371420 ATAAAGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAATGCTGCCATTATTTGC 371361 Query 47252 tataattttgttttttaat---tcatt---tgaccaaagttttcgttcagttaatgtttt 47305 ||||| || | || | |||| | ||| ||| | | ||| ||| ||| Sbjct 371360 AATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCT-----AGTAAATCATTT 371306 Query 47306 taaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATT 47365 || ||| ||||| || | || || ||||||||||||||||| ||| || || Sbjct 371305 AGCAA-ATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTT 371247 Query 47366 ACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGG 47425 ||| |||| || | | ||||| || || |||||||| | ||| |||||||| || Sbjct 371246 CGAGGTAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGG 371187 Query 47426 CATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNG 47485 ||| | | | ||||| ||| | | |||| ||| ||| Sbjct 371186 CATTGGAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAA 371127 Query 47486 TTTCCAATCCCAAAGATCTGA---TGGAACAACATTCCAAAAATCATATTGAAGAATTCC 47542 | |||||| ||||| | || ||| ||| ||| | |||| |||| | ||| || Sbjct 371126 ATCCCAATCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACC 371067 Query 47543 TTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACA 47602 ||||| || ||||| |||||||| || || |||||| || || || ||||| Sbjct 371066 CTTACTCGCAGGCGAACCGGAATATGTTTCGTATGGCCCGTATTTTTCTGCAAGCTCACA 371007 Query 47603 ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGC 47662 || || || | || |||||| || |||||| |||| | | |||| ||| | || Sbjct 371006 GCTAGCGTCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGC 370947 Query 47663 TTCTGATGATTCAAAAGG-ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACAC 47721 | | || || | || ||| || ||||| | ||||||| | Sbjct 370946 TCCCTCAGACTCGTACGGCATACGAAGCATCATAAAACAG-TCTGCGAGCCCTTGAATGC 370888 Query 47722 CAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGT 47781 |||| || | ||| | ||| || ||| || | | ||| | | ||| | Sbjct 370887 CAATCCCCAATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATC 370828 Query 47782 TTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTAT 47841 | || || | |||||| | | || |||| |||| |||| Sbjct 370827 CAACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTAT 370768 Query 47842 TAAAATCAAAC---TTGTTATTTATAACAAACCTATT----AAGTGCTATAGATGCTAGA 47894 |||||||||| ||||||||| || ||| | ||| ||| | ||||| || ||| Sbjct 370767 CAAAATCAAACGTCTTGTTATTTTTATCAA-CGAATTTTGGAAGGCCAATAGACGCCAGA 370709 Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954 ||||| || || || || | | |||| |||| ||| ||||| | |||| |||| Sbjct 370708 TTACAGACGGCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTT 370649 Query 47955 CATTTGATAGTACCCAAATTTTGATGATTA-TTNNNNTTGTTACATGCGTCCTTGTAAAG 48013 | ||||| |||||||||| || ||| || | || || || || || ||| Sbjct 370648 GAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCA-GCATCTTTATAACA 370590 Query 48014 CATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC 48073 ||||| ||||| || || || || |||| | | ||| | ||||| || || Sbjct 370589 AATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGC 370530 Query 48074 CTTTATAACAGCTCTAGCTTTATTATCATGTT---CGTATTTAGTATATAACTTCTCAAA 48130 || || | | | | | | |||| | || | ||||| ||||| ||| Sbjct 370529 TTTCATC---GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAA 370473 Query 48131 TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATC 48190 ||||| || | |||| | || || ||||||| || ||||| | | |||||| Sbjct 370472 ATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATC 370413 Query 48191 CTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATC 48250 | ||| || | ||||| ||| || | ||| || | |||||| || ||| | ||| Sbjct 370412 TTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATC 370353 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 | | ||| | ||||| || || |||| | | | ||||| ||| || | | ||| Sbjct 370352 GCGACATCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATC 370293 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 | | ||||| || || ||||| ||||| || ||||| || || || |||||||| Sbjct 370292 AACGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATC 370233 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 ||||| || ||||| | |||||||| | | ||| || | | ||||| ||| | || Sbjct 370232 AATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCC 370173 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490 ||| ||||| |||||| ||| | |||| |||||||| | || | || | ||| Sbjct 370172 ATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACC 370113 Query 48491 ACCTGCCATTTTAG--ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548 ||| || | ||| || || | ||| ||| || || ||| | || || | ||| Sbjct 370112 ACCCGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATT 370055 Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||| ||| || | | || ||||||| |||||||| || | ||| |||||| Sbjct 370054 GAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAA 369995 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||| | ||| || | ||||||| |||| |||| | |||||||| | |||||||||| Sbjct 369994 TTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCA 369935 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 | ||| || ||||| | ||| ||||| ||| || ||||| | | || ||| Sbjct 369934 AGTGCAGCTTCAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGT 369875 Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788 |||||||| |||| |||||| | ||||| | |||||| ||| |||| | ||||| || Sbjct 369874 GGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAG 369815 Query 48789 CCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT-AATTGATGAATTTATTCTTTCCTT 48847 ||||||| | |||| ||| || || | | ||| |||| |||||| |||||||| | Sbjct 369814 GCAAAATAATCGTATTCAAAATCCTT-TGAAAAATCAATTTTTGAATTAATTCTTTCTCT 369756 Query 48848 ATGTT 48852 || || Sbjct 369755 ATTTT 369751 Score = 244 bits (270), Expect = 1e-59 Identities = 587/868 (68%), Gaps = 45/868 (5%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| ||||||| ||||| ||||| |||||||| || | | ||| ||| | Sbjct 87569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 87628 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| ||||||| ||||| || || || |||||| | |||| || | || ||| Sbjct 87629 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAAAGT 87687 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC-AATTCATTCCTATTAA 18848 | |||||| || ||||||| ||||||| | ||| | || | ||||||| || || | Sbjct 87688 AATCTATCAGCAACAAATTCAATATATTGGGCCATAAG-TCTCGAATTCATACCAATAAG 87746 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | |||||| || | || |||||| | | ||| | | || || |||||||| || Sbjct 87747 ATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 87806 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCA 18966 | |||||| | | | | || | ||| |||| | || ||||| ||| Sbjct 87807 TTGTTGTACTCTAGGAGC--TGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCA 87864 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||| ||| || || || || | ||| || | ||||||||||||||| | |||||| Sbjct 87865 AAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGC 87924 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACC 19085 || ||||| | |||||| | ||| || || | | |||| | | |||||||| | || || Sbjct 87925 ATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCC 87983 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAAC-TAGCATCATTATTATGAATCC 19144 ||| || || || ||| | |||||| || || | || ||| ||| |||| Sbjct 87984 TTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGC-TCAGAATTC---ATCC 88039 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||| |||||| || || |||||||||||| | || ||| | |||| Sbjct 88040 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCT---------TCAATATGAG-AAATT 88089 Query 19205 GATACATACGCTCATCTGTA--TCTTTAACAT-----ATGCATCTATCAATAA--ACTGT 19255 | | || | | ||| || ||||||| | || |||||||||||| | || Sbjct 88090 GCTTCAAA-GAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGA 88148 Query 19256 ACA--TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 | | |||| ||| || | ||| |||| ||| ||||| | ||| | ||| ||||| Sbjct 88149 ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTC 88208 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | ||| |||| ||| ||| || || | | || ||||| |||| || |||||||| Sbjct 88209 CGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACT 88268 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAATGT 19430 || ||||| |||||||| |||| ||| ||||||||| ||||| ||| |||| Sbjct 88269 TGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCT----TTAAGAC 88324 Query 19431 ATTCC-AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 |||| |||| || |||||| | || ||| | ||||||| |||||| || || | Sbjct 88325 TTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTT 88384 Query 19490 CTGCTTTTTTATACATGTTCCATATATC 19517 | |||||||||||||| ||| ||||| Sbjct 88385 CAGCTTTTTTATACATTGACCAAATATC 88412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108673525520