Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 244 1e-59 >seq2 Length=1262744 Score = 244 bits (270), Expect = 1e-59 Identities = 590/883 (67%), Gaps = 39/883 (4%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| |||||||||| ||||||| ||||||| || || || || |||| Sbjct 87555 CATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTG 87614 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 ||||| ||| ||||| ||||||| |||||||| || || || | | || | Sbjct 87615 AAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGA-AT-A 87672 Query 36992 T--AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | || | || | ||||| ||||||||||| || |||| ||| ||| | Sbjct 87673 TCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAA 87732 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACA 37109 || |||||||| || | || |||| | || |||||| | |||| | | ||| Sbjct 87733 TTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACA 87792 Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGG--GATATTTTAAATAT---- 37163 || ||| |||| | | || | | | || | | || ||||||| | Sbjct 87793 GCTTCTG-----ATATGA----TTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGG 87843 Query 37164 ---TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||| | | |||||| ||||||||| ||| | ||||||||| | ||| || | |||| Sbjct 87844 GCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCA 87903 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 |||||||| || | ||| ||||| | || | |||||||| |||||| ||||| ||||| Sbjct 87904 TTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAA 87962 Query 37281 GAT-CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 | | |||||||| | ||| |||||||| || ||| | | || | | | | |||| Sbjct 87963 GCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGA 88022 Query 37340 TGAACTATAATCAGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 | |||||| |||||||| ||| ||| ||||| || ||| ||| ||| Sbjct 88023 TCGC------TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTC 88076 Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 ||| |||||||| ||||| | | ||||| | | || || ||||| |||| Sbjct 88077 AATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATC 88136 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 ||| ||||| ||| ||||| || || | |||||||| || |||||| ||||| | Sbjct 88137 AATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATA 88196 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 |||||||| | || ||| | || ||| || | ||||||||||| |||| Sbjct 88197 CATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAAC 88256 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TC 37633 || |||||||| || |||||||| || | ||||||||| ||||||||||||||| || Sbjct 88257 AATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTC 88316 Query 37634 ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCA 37693 ||| | | ||| |||||| || |||||| || ||||| ||| ||| ||| Sbjct 88317 -TTTAAGA--CTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCA 88373 Query 37694 AAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTA 37736 ||| || || ||||||||| | ||||||||| ||| Sbjct 88374 AAACGACGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 88416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316666728720