Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 203 5e-47 seq1 132 7e-26 >seq2 Length=1262744 Score = 203 bits (224), Expect = 5e-47 Identities = 575/865 (66%), Gaps = 33/865 (4%) Strand=Plus/Plus Query 17866 TTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 |||| ||||| || ||| | || |||||||| || || || |||| | ||| || | | Sbjct 87569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 87628 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT-AATTCGTATAAT 17983 ||| ||||||| ||||||| || || |||||| ||| || | | | | Sbjct 87629 CCATCCAATCAAAAGGATTAGAAACGTTGTAG-ATTTTTGGAATATCCAAGGCAAAAAGT 87687 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTAG 18042 |||||||| || |||||||| | |||||| | ||| || || | |||||||||| | || Sbjct 87688 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAAG 87746 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | ||| |||| ||| || ||| | | | || | ||||||| ||| ||| || Sbjct 87747 ATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 87806 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | | ||| |||| ||| |||||| | ||| | | || ||||| |||||| || Sbjct 87807 TTGTTGTACTCTAGGAGCTGGTAATTTAA-ATTTAAGGGCTTT--ATATATTAAACAAGC 87863 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA-TTCGTTACTAAACGTTAACCCGG 18221 |||||||| || | ||||||||| | | || ||| ||| ||| ||| || | || | Sbjct 87864 AAAATCAGCATGGAGACCTTCATCAC-GACTAATAAGTTCATTAGAAAATGTGAGTCCAG 87922 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | || | |||||| |||||||| || | || |||| |||||| | || | Sbjct 87923 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 87982 Query 18282 CCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG---- 18336 | ||||| |||| ||| | || | ||||||||||||| || |||||| Sbjct 87983 CTTCAACAGCACA-GAATCCAATAATTCTTTCAGCAAAA-------GATCGCTCAGAATT 88034 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGT--ATACTCTCTATAGCA 18394 |||||||| |||||||||| ||| |||| | ||| || || Sbjct 88035 CATCCATTTAGTTGCCCATTCTGCTTTCTTTTT--TACAGCTTCAATATGAGAAATTGCT 88092 Query 18395 TTAAACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | || | | ||| | |||||| || | ||||| | || || | || |||| Sbjct 88093 TCAA--AGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAAT 88150 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 | ||||| |||||| ||| |||| || |||||| |||| || |||||| || | Sbjct 88151 AAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCG 88210 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||| || || ||| || || || | || || || |||| ||||| ||| | Sbjct 88211 GTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTG 88270 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 || || ||||| ||||||||||| || |||||| ||||| || || ||| | | || Sbjct 88271 CAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCC 88330 Query 18633 ATTCATCTA-TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 | || |||| |||||| |||||||| |||||| | |||||| || | ||| || Sbjct 88331 AATC-TCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCT 88389 Query 18692 TGTTTGTACATTTTATAAATATCTT 18716 | ||| |||||| ||||||||| Sbjct 88390 TTTTTATACATTGACCAAATATCTT 88414 >seq1 Length=1288507 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| ||| | ||||| || || ||||| || || ||||| ||||| ||| Sbjct 547750 AAGAAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAA 547691 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| |||| |||| || || || || || || ||||| || || || ||||| Sbjct 547690 CCTTCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCT 547631 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| | |||| | ||| || ||||| | |||||| |||||| |||| || Sbjct 547630 GATCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGAC 547571 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 || ||||| || ||| | || | |||||||| |||||| | ||||||||||||| Sbjct 547570 TACAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTAAGACTTAGAGGCGGTGTAA 547513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871835328800