Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 161 3e-34 >seq2 Length=1262744 Score = 161 bits (178), Expect = 3e-34 Identities = 355/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 481071 TCCTATCAAATCTTCCTGGACGTGTTAATGCGGGATCTAATACATCAGAACGATTTGTTC 481130 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 481131 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 481189 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 481190 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 481249 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 481250 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 481308 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 481309 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 481368 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | |||| | Sbjct 481369 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCCAATAA 481428 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 481429 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 481486 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 481487 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 481543 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 481544 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 481584 Score = 131 bits (144), Expect = 5e-25 Identities = 287/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 154538 ATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAATGA 154597 ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 371594 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 371535 Query 154598 TTTAGGCTCTGGGTCTTCCATCCATAAAT--TCATACTCTGCGATTGGCAAATATATAAT 154655 | | | | | |||||| || ||| ||| | |||||||| |||| |||| Sbjct 371534 TGCAAAGTTAGCATTTTCCAT--ATGAATGTTCAAAGATTGCGATTGACAAACATATGGA 371477 Query 154656 CCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTAT 154715 || | || |||||||||||||| |||||| ||||||||||||||| |||| || Sbjct 371476 CCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAA 371417 Query 154716 TTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAATA 154775 ||| |||| ||| || | | | |||| ||||| ||| || || || |||||| Sbjct 371416 AGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAATGCTGCCATTATTTGCAATA 371357 Query 154776 ATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT-- 154833 ||||| | ||| | || |||||||||| || | |||| |||| | || || Sbjct 371356 ATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGC 371297 Query 154834 --ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCTGCTG-TAAATATTACTTG 154890 ||||| || || | || ||||| | || | | | | || ||||| || | Sbjct 371296 GGATTTACTA--CAAAG--AACTCACCAGATAGTACTCTAC-GATGATAAATGTTCGAGG 371242 Query 154891 TAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCATGG 154950 ||| ||||||||| | ||| || ||||||||||| || ||| |||||| ||||| | Sbjct 371241 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTG 371182 Query 154951 GAG 154953 ||| Sbjct 371181 GAG 371179 Score = 113 bits (124), Expect = 1e-19 Identities = 344/529 (65%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||||||||||| | || | || || ||| |||| || ||||||| ||| Sbjct 370330 CCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAA 370271 Query 156039 ATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTG 156095 || |||| ||| || | ||| || ||| ||||| | ||||| |||||| | ||| Sbjct 370270 ATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTA 370211 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 | || | ||||| ||||| | ||||| || | ||||| ||||| ||||||| ||| Sbjct 370210 TAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAA 370151 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 |||| | | || |||| | | |||| |||||| | ||| ||| | Sbjct 370150 CCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTT 370091 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 ||||||| ||| || | || ||||| | || ||||| ||| || |||| | Sbjct 370090 GCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAA 370031 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | || || | |||||||||||| || || | || || ||||| |||||||||||| Sbjct 370030 AAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 369971 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTTCTCAAGATTAGACC 156393 ||||||| || | || | | || ||||| || | | || |||| || | | Sbjct 369970 GTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCT--TCAATATCACCAC 369913 Query 156394 CGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCAT 156453 ||||||| |||||||| |||| | ||| || || | || |||| | Sbjct 369912 AATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGT 369853 Query 156454 CAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATC 156502 ||||| ||||| || | | ||| |||||||| || | |||||||| Sbjct 369852 CAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATC 369804 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| |||||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 559858 GAAATAAAGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 559799 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 559798 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 559745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817260562066