Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq9 114 2e-20 >seq9 Length=414685 Score = 114 bits (126), Expect = 2e-20 Identities = 269/401 (67%), Gaps = 24/401 (6%) Strand=Plus/Plus Query 165951 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA- 166009 |||| ||||| |||||| ||| |||||||| ||||| | | |||| | ||||| ||| Sbjct 216010 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCATGGAGAAT 216069 Query 166010 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 166067 || ||| | || ||||| |||| | || ||| |||||||||| | |||||| Sbjct 216070 CATCATTGCAAAGT---ACTATTGTTAATATGGCTCAAAATTTTGTTGGAAGTAATAATC 216126 Query 166068 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 166125 || || | ||||| |||||||||||||| ||| |||||| || |||||| | Sbjct 216127 TAAATCTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGAAAAGATGCAA 216186 Query 166126 -TGCTGCATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTAGAG 166184 |||||| || | ||||| | ||| || | | |||| | |||||| || || Sbjct 216187 GTGCTGC-TC--GTTATATATTTACTAAGCTATCTAAATGGACTAGATATATTTTCCCAG 216243 Query 166185 AAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTC 166232 | | ||||| ||| | |||| |||| || ||| || ||||||| | Sbjct 216244 AGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGACAACAAATTGAACCTTTAT 216303 Query 166233 ATTTTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 166292 ||| ||||| |||| ||| | ||||| | |||||| || ||| ||||| ||||| | Sbjct 216304 ATTACGTTCCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAATTGGTACAGGTT 216363 Query 166293 GGTCATGTTTTATACCTCAATATAATCCTTTAGAATTAATT 166333 || ||| | ||| | |||||||| ||| ||||| Sbjct 216364 GGAGTAGTTCAGTTCCTAACTATAATCCAAAAGATATAATT 216404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489457689840