Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7 134 1e-26 >seq7 Length=814761 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || | || || || ||||| || | ||||| ||| | | Sbjct 515635 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 515694 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| ||||| || |||||||| || || |||||| Sbjct 515695 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAA 515754 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| | |||||| |||| | || ||||| ||| Sbjct 515755 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 515814 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| || || || ||||||| || Sbjct 515815 ATTCAAAAAGAGTCCACTTTACACTTAGT 515843 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || | || || || ||||| || | ||||| || | | Sbjct 515863 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 515922 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| ||||| || || ||||| || || |||||| Sbjct 515923 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 515982 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || ||||| | |||||| |||| | || || || ||| Sbjct 515983 CAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 516042 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| || || || |||| || || ||| || Sbjct 516043 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGA 516078 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 |||||| ||||| || |||||||| || || ||||||||||||||||||||||| || || Sbjct 516686 AAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAA 516745 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||| | |||||| |||| | || ||||| ||||||||||| || || || |||| Sbjct 516746 ACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACA 516805 Query 24907 CTTGGT 24912 ||| || Sbjct 516806 CTTAGT 516811 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || | || || || ||||| || | ||||| ||| | | Sbjct 516535 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 516594 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| ||||| || |||||||| || || |||||| Sbjct 516595 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAA 516654 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| || ||| Sbjct 516655 CAACGTTTGATCTTTGCAGGAAAA 516678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897498773040