Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 179 9e-40 seq9 125 2e-23 >seq2 Length=1262744 Score = 179 bits (198), Expect = 9e-40 Identities = 546/826 (66%), Gaps = 27/826 (3%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 |||||||| ||| ||| ||| | || ||| | |||||| || ||| | | ||||| Sbjct 88400 ATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGATCTAAGTCAAGAT 88341 Query 131525 ATTGATGATTGGGAAAAA-TTAACCTTGAA--TGAAAAAGATTTTGTTTCCAAA---GTT 131578 | | |||||||||| |||| || ||||| | ||||| | |||| ||| Sbjct 88340 ACTAGAGATTGGGAAAGTCTTAAA---GACCCTGAAAGACATTTTAT---CAAATATGTT 88287 Query 131579 CTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATT 131638 | |||||||| || | ||||||||| |||||||| ||||| | | | |||||| || Sbjct 88286 TTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGCAGTAAATTTCCTT 88227 Query 131639 CAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCT 131698 |||||| | || || |||| | | || || | |||||| || ||||| Sbjct 88226 AGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCTATTGAACAA 88167 Query 131699 ATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAA 131758 || ||||| || | ||||||||| | ||||| || | ||| |||| | | || Sbjct 88166 ATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTAC---TGAAATTAAAGAA 88110 Query 131759 AAT-AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGG 131815 | |||| | ||||| || | | | || || | |||||||||||||||||| Sbjct 88109 CGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTAAAAAAGAAAGCAGAATGG 88050 Query 131816 GCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCT 131875 || | ||||||||| | ||| || | |||| || |||| || | | || | Sbjct 88049 GCAACTAAATGGATGAATTCTGAG--CGATC-TTTTGCTGAAAGAATTATTGGATTCTGT 87993 Query 131876 TGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCG 131934 ||||||||| || | ||||| ||| ||||| ||||| || ||||||||||| || || Sbjct 87992 GCTGTTGAAGGAATTCTATTTTCTGGTAGCTTT-TGTGCAATTTTTTGGCTTAAAAAACG 87934 Query 131935 TGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCA 131994 |||| | |||||||||||| |||| || ||| || | || | ||||||| | || Sbjct 87933 TGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCA 87874 Query 131995 TACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATAT 132054 | |||| |||||| ||||| |||| | || |||| | | || | Sbjct 87873 TGCTGATTTTGCTTGTTTAATATATAAAGCCCTTAAATTTAAATTACCAGCTCCTAGAGT 87814 Query 132055 TAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCC 132114 ||||| | ||| ||||| ||||| | || | | ||| || || || | || Sbjct 87813 ACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCC 87754 Query 132115 TTGCAATTTGATTGGGATGAATGC-TGACTCTATGAAGGAGTACATTGAATTCGTTGCTG 132173 | || | ||||| |||||| | |||| |||| | || |||||||| ||||||| Sbjct 87753 TGTTGATCTTATTGGTATGAATTCGAGACT-TATGGCCCAATATATTGAATTTGTTGCTG 87695 Query 132174 ATCGTTTAATTAACCAACTTGGATATTCC-AAGATTTATAACACCCAAAACCCCTATACA 132232 || | ||| || |||||||||||| || || || ||| || || | | Sbjct 87694 ATAGATTACTT-TTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGAT 87636 Query 132233 TGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 |||||||| ||||| ||| |||||||||| ||||||||||||| Sbjct 87635 TGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAA 87590 Score = 102 bits (112), Expect = 2e-16 Identities = 321/490 (66%), Gaps = 23/490 (5%) Strand=Plus/Plus Query 112955 TGATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACTCTCTACTGTT 113014 ||||||| | ||||||||||| || |||||||| | | || |||||| | | Sbjct 371117 TGATTGGGATTTGCTTAAAGATAGGATTTCCAAACATGGTATTCGTAATTCTCTATTAAT 371176 Query 113015 GGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCC 113074 | |||||||| ||||| || ||| | || ||| | ||||| ||||| |||| ||||| Sbjct 371177 ATCTCCAATGCCAACAGCATCCACTTCGCAAATTTTAGGTAACAATGAGAGTTTTGAGCC 371236 Query 113075 AATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAA 113134 | |||| || |||||| || | || ||| | |||||||| ||||||| ||| Sbjct 371237 ATTTACCTCGAACATTTATCATCGTAGAGTACTATCTGGTGAGTT----CTTTGTAGTAA 371292 Query 113135 AT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACT 113190 || || ||| | | || | || | | || |||| | || | || | Sbjct 371293 ATCCGCATTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGGCTTAAGCAGA 371352 Query 113191 CCATTATTGCTAATCAAGGTTCGGTTCAACAT---CTAAAATTGCCTGA----TTGCGTG 113243 |||||||| ||| | || ||||| || || | | | || || | || | Sbjct 371353 ATATTATTGCAAATAATGGCAGCATTCAAAATATACTTACAATTCCGGAAGATATACGCG 371412 Query 113244 AAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCA 113303 || | || ||||||| | ||||||||||||||| |||||||||||||||||| Sbjct 371413 --AGCTTTA--TAAGACTGTATGGGAAATTAAGCAAAAGACAGTAATTGATATGGCTGCA 371468 Query 113304 GATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACA-CCTC 113362 ||| | || | | | |||||| || || ||||| ||| || | | | || Sbjct 371469 GATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAAC--ATTCATATGGAAAATGCTA 371526 Query 113363 AC-CAGATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTA 113421 || | ||| | ||||| | ||||| || |||||||||||| |||||||||| | Sbjct 371527 ACTTTGCAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTAAAAACAGGCA 371586 Query 113422 TGTATTATTT 113431 | |||||||| Sbjct 371587 TTTATTATTT 371596 Score = 100 bits (110), Expect = 7e-16 Identities = 329/505 (65%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || ||| | |||| ||| | | || ||| | ||||||||||||| Sbjct 715932 TTAAAGGTAAAGAAGGACGTTTCAGAGGAAATTTGAGTGGTAAAAGAGTTGATTTTAGTG 715873 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 ||||| ||| || | ||||| || | ||| || ||||| | | || || || Sbjct 715872 GAAGAACTGTTATTTCTCCTGACCCTAATATTGAAGTTGATGAAGTTGTGGTACCTATGA 715813 Query 305106 AAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGA 305165 ||||| ||| | || | ||| || | |||||| | | |||||| | ||| | Sbjct 715812 TCATTGCAAAGAAATTGACTTATCCCGAAAGAGTTAATGCTATTAATATTGACTCTTTAA 715753 Query 305166 GACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 || |||||| |||||| || | | ||||| || | |||| || || | Sbjct 715752 GAGAAGCTGTTCTAAATGGACATGATATTTGGCCAGGAGCATGCTATGTT-TATAAGA-- 715696 Query 305226 AGCAAAAGAAGACAATAT---CTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG- 305281 | || |||| ||| | ||| || ||| || || | || | | | Sbjct 715695 -GTAATGGAAGCAAATCTAGTCTTAGA----TATGCTAATAGAAGAGTTGTATCAGAGCG 715641 Query 305282 -CTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAA 305340 ||||| ||| |||||||| |||||| |||| ||| || | ||||| Sbjct 715640 TCTTGAGATTGGAGATATTGTAGAAAGACATATGAAAACTGGAGATATCGTCTTATTCAA 715581 Query 305341 TAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TG 305399 ||| |||||| | |||| | | ||| ||| |||| ||||| ||| | | || Sbjct 715580 TAGACAACCAAGTTTACATAGACTTAGTATTATGTCTCACAAAGTTGTAGTTATGCCATG 715521 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 || || ||| |||| |||| | |||||||| | ||||||||||| ||||| ||||||| Sbjct 715520 GAGA-ACTTTTAGATTCAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTCGATGGAG 715462 Query 305460 ATGAAATGAATATGCATGTACCTCA 305484 ||||||||||| | ||| | ||||| Sbjct 715461 ATGAAATGAATCTTCATCTTCCTCA 715437 >seq9 Length=414685 Score = 125 bits (138), Expect = 2e-23 Identities = 333/502 (66%), Gaps = 24/502 (5%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || |||||| |||||||||| | ||| || |||||| | | | |||||||| Sbjct 215874 GATTTTATTCATAAAGAACTTGTATTATTTAGTAGATATGATACTACTAGATCTATTCCA 215933 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTG-----TTTCA 279920 ||||| | |||||||| |||||| ||| | || | || || ||| ||| | Sbjct 215934 AATTTATTAGATGGTTTAAAACCTGGACAAAGAAA-AGTACTTT---TTGCAACATTTAA 215989 Query 279921 AAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATG 279980 ||| || || ||| | || || ||||| || ||||| ||||||||| | |||||| Sbjct 215990 AAAAAAGCTTAATAATG-AACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATA 216048 Query 279981 CAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATT 280040 | ||||||||| || ||| | || | ||| || ||||||| | | || ||| ||| Sbjct 216049 GTGCTTATCATCATGGAGAATCATCATTGCAAAGTACTATTGTTAATATGGCTCAAAATT 216108 Query 280041 TTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTC 280100 || | | || || ||||||| | |||| ||||||||||||| | | | Sbjct 216109 TTGTTGGAAGTAATAATCTAAATCTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAAG 216168 Query 280101 ACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATAT-TACA 280159 | |||||||||| || ||||||||| ||| ||| | || ||| || | Sbjct 216169 AAGGTGGAAAAGATGCAAGTGCTGCTCGTTATATATTTAC-------TAAGCTATCTAAA 216221 Query 280160 --AACAAGTTAT-TTATC---AATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGAT 280213 || || ||| || || | ||||| || ||| |||| | || | |||||| Sbjct 216222 TGGACTAGATATATTTTCCCAGAGGCTGATGATCCTTTATTAACTTATTTATATGATGAT 216281 Query 280214 GGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGT 280273 || | |||||||| |||||| | |||||| || || |||||| | || |||||| Sbjct 216282 GGACAACAAATTGAACCTTTATATTACGTTCCAATAATTCCAATGATTTTGGTAAATGGT 216341 Query 280274 GCTCAAGGAATTGGAACAGGTT 280295 || | |||||||| ||||||| Sbjct 216342 ACTGATGGAATTGGTACAGGTT 216363 Score = 96.9 bits (106), Expect = 8e-15 Identities = 241/367 (66%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 || || ||||||||||| ||||||||| ||||| || | | ||| || ||||| || Sbjct 215118 GGAATCCCAAAACTTGAAGATGCAAACGAAGCTGGTGGACCCCATTCTAAAAAATGTACT 215177 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 | | |||||||| || ||||||||| || | | |||| || |||||| || || Sbjct 215178 CTTATACTTACTGAAGGTGATTCTGCTAAAACTTCTTGTCTTGCAGGATTATCTATTGTT 215237 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||| | || | | ||| |||||||| || | |||||| | | |||| | | || Sbjct 215238 GGTAGAGACTATTTTGGAGTATTTCCACTACGTGGTAAACTTTTAAATGTTAGAGA---- 215293 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAA 279304 || | |||||| ||| || || ||||| |||| | ||| | Sbjct 215294 ----------AGCTTCATTTAAA-CAACAAATTGGTAATGTTGAAATACAAAATATTCTT 215342 Query 279305 CAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCA---AGTTTACGATAT 279361 ||||||||||||||| || ||||||| | || | || | |||| ||||| Sbjct 215343 AAAATATTGGGATTAGGTATTGGACAAAAATATGATAATGGACCAGTCAATTTAAGATAT 215402 Query 279362 GGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATA 279421 ||| | || | |||| || |||||| ||||| ||||| ||||||||| | || Sbjct 215403 GGTTCTTTAATGCTAATGACTGATCAAGATCATGATGGTAGTCATATTAAAGGACTCATT 215462 Query 279422 CTTAATT 279428 |||||| Sbjct 215463 ATTAATT 215469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812526291298