Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=1262744 Score = 113 bits (124), Expect = 4e-20 Identities = 374/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Minus Query 43727 GACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 || || ||| |||||| |||||||| | ||||| |||||| | |||||| ||||| Sbjct 88412 GATATTTGGTCAATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGAT 88353 Query 43787 TTGACTAAAGACT-TAGCACATTGG-ATTGCATTAAAACCACAAGAAAAACATTTTATAT 43844 | | | |||| ||| | ||||| | | ||||| | | |||| ||||||||| Sbjct 88352 CTAAGTCAAGATACTAG-AGATTGGGAAAGTCTTAAAGACCCT-GAAAGACATTTTATCA 88295 Query 43845 CTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTC 43904 | ||||| || || |||||||| || || || || || | ||||| || | ||| Sbjct 88294 AATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGC-AGTA 88236 Query 43905 GGTTTGCGCA-AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 ||| | | |||| | ||| |||| ||||| || | ||||| |||||||| | Sbjct 88235 AATTTCCTTAGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCT 88176 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || ||| | || ||| |||| || | || || |||| || || | || Sbjct 88175 ATTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGAAATT 88116 Query 44024 CACGAGAAGCATCGATTG---TTTAATGCGATAG---AAACAGTACCTGCGATTAAACAT 44077 | |||| | || | || ||| | || || | | | | ||| | ||| | Sbjct 88115 AA--AGAA-CGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTG---TAAAAAAG 88062 Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 |||||||| ||||| ||||||||| ||||| | ||||||| ||| || || | Sbjct 88061 AAAGCAGAATGGGCAACTAAATGGATGAATTCTGAGCGATCTTTTGCTGAAAGAATTATT 88002 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTT 44196 | || | ||| ||||| ||| | ||||| || | | |||| | | || |||||| | Sbjct 88001 GGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTG-CAATTTTTTGGCT 87943 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 || ||||| || | |||||||| | || ||||| ||||| | || ||||||||||| Sbjct 87942 TAAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGA 87883 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| | ||| ||||||||||| || Sbjct 87882 AGGTCTCCATGCTGATTTTGCTTGTTT 87856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455912808090