Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 >seq2 Length=1262744 Score = 141 bits (156), Expect = 1e-28 Identities = 897/1415 (63%), Gaps = 52/1415 (4%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTC--ATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 |||||| ||||| |||| ||| ||||| || | ||||||||| | | || || Sbjct 369865 TGGAAAGACCACA--ACATCTTCTGATGCGGGTCTCTTGTGGTATTCATTGTGGTGATAT 369922 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACAC 104330 ||| ||| | || ||||| || | | || ||| ||| || | ||| ||||||| Sbjct 369923 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTT-ACTCATGCAACAC 369981 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | || ||||| ||| | || || ||| |||| |||||||| ||| || | || | Sbjct 369982 CCACACTCTTTAATTCAGGCACTCCACGACCTCAAATGTCATCTTGTTTTTTACTCAGGA 370041 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA- 104449 || || ||||| |||||||||| || || || || | || |||||| | | Sbjct 370042 TTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--CGCAAACATTAG 370099 Query 104450 -AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT 104508 ||| || || ||| ||||| || | | || | |||| | | || ||| Sbjct 370100 TAAGACTGCGGGTGGTCTTGGGGTGGCAGTGAGTAATATTAGAGGAACTGGTTCATATAT 370159 Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568 ||| || |||||||| ||| |||| | ||||| ||||| ||||| | ||| | ||| Sbjct 370160 TCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACAC 370219 Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGA 104625 || | ||| | |||||| ||| | || || || | || ||| | ||| | || Sbjct 370220 TGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGGA 370279 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 ||| ||||||| ||| | | ||||| |||| | | || || || | || || Sbjct 370280 GCCGTGGCACGTTGATGTTGTAGAGTTTATTGAAATCAGGAAGAATCACGGAAAGGAAGA 370339 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | | || ||||||||||| | || || ||| |||| ||||| |||||| | ||||| Sbjct 370340 GATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAGT 370399 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCTGGTCTCTCCGATG 104804 |||| || | ||||| |||| | || ||||| || ||| || | |||| Sbjct 370400 TGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGATG 370458 Query 104805 CCGTGGGTGAGGAGTTT--GAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 ||| || || ||| |||| || || | |||| ||| || |||| || | | Sbjct 370459 TTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAAG 370516 Query 104863 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACTG 104921 ||| || ||| || || | | || ||| | || |||||| ||||| | Sbjct 370517 GAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACGG 370575 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTG 104980 | ||||||| || ||| ||||| | ||| || | || ||||| || || |||||| Sbjct 370576 GGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTTG 370634 Query 104981 GGTGTGATCAAGAGTTCC----AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 105036 | || | | ||| | || | || ||||||||| | |||| || || || Sbjct 370635 G----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCACGGA 370690 Query 105037 TGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGAC 105096 || || || ||||| || || || || | || || || | || ||| | | | Sbjct 370691 CGAAGTTGCCGTCTGTAATCTGGCGTCTATTGGCCTTCCAAAATTCGTTGATAAAAATAA 370750 Query 105097 AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156 ||||| ||||||| ||| || | | ||||||||||| | || | || | || Sbjct 370751 CAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGAA 370810 Query 105157 CAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | ||||| | || ||| || | | ||| || | ||||| ||| | || Sbjct 370811 TAAATTGATTGACGTTGGATATTATT--CTCTCAAAGAGTG-TAAAAAATCGAATTTAAG 370867 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA-TGTAT--TCATTCTTTGTCG 105270 ||| |||||| | || | || |||| || ||||| || ||| | | || ||| || Sbjct 370868 ACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGTTTTATGATGCTTCGTAT 370927 Query 105271 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTA 105330 | | | || || || | ||| ||| | | ||| | || ||||| || || Sbjct 370928 GC---CGTACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATTTTTGAAGTTATCTA 370984 Query 105331 TCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390 | | || ||||| || || || | ||| | ||||| | || ||||| ||||| | Sbjct 370985 TTATGCAGCTCTCGACGCTAGCTGTGAGCTTGCAGAAAAATACGGGCCATACGAAACATA 371044 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACC 105448 | ||||| || || | | |||| || |||||||||||||||| | || | ||| Sbjct 371045 TTCCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACACC 371101 Query 105449 AAGCT----TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 | || | | || ||||| || || || | || | | ||| |||| Sbjct 371102 AGACTCTGGACTTTGTGATTGGGATTTGCTTAAAGATAGGATTTCCAAACATGGTATTCG 371161 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||| ||| | || |||||||||||||||| ||||| | ||||| || ||||| || Sbjct 371162 TAATTCTCTATTAATATCTCCAATGCCAACAGCATCCACTTCGCAAATTTTAGGTAACAA 371221 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTATC 105599 ||| | ||||| || | || ||||||| |||| Sbjct 371222 TGAGAGTTTTGAGCCATTTACCTCGAACATTTATC 371256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260668766320