Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 158 3e-33 seq1 140 8e-28 >seq7 Length=814761 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 515853 AAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 515794 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| || | |||||| Sbjct 515793 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTC 515734 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || || |||||| || || || || || || || || |||||| || | ||| Sbjct 515733 CTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGT 515674 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || | |||||| ||||| | |||||| || Sbjct 515673 GATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 515632 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||| ||||| || || | || || || ||||| || | || || || Sbjct 516060 AGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCC 516001 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||| ||||| | |||||||| ||||| || | ||| ||||| || || |||||| || Sbjct 516000 TGCAAAGATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTT 515941 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || || || || || || ||||| || | |||||| |||||||| || | ||| Sbjct 515940 AACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 515881 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 515880 CTTAACGAAAATCTGCAT 515863 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 516821 AAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 516762 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| || | |||||| Sbjct 516761 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTC 516702 Query 211016 CTTGTCCTGGATCTTT 211031 ||| || || |||||| Sbjct 516701 CTTATCTTGAATCTTT 516686 >seq1 Length=1288507 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||||| || | || | ||||||||| || ||||| || || || | || || || Sbjct 547526 AAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCT 547585 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| ||||| || || ||||| || || ||||| |||||||||| || || Sbjct 547586 ACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTC 547645 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| |||||||||||| || || || || || || || || |||||| || | || Sbjct 547646 CTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGT 547705 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || | ||| || ||||| | ||||| || Sbjct 547706 GATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 547747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151732670570