Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 206 2e-48 >seq2 Length=1262744 Score = 206 bits (228), Expect = 2e-48 Identities = 575/860 (67%), Gaps = 29/860 (3%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||||||||| |||||||| |||| | |||||| | Sbjct 87569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 87628 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| ||||||| ||||||| ||||||| |||| | | | || | ||| | Sbjct 87629 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 87688 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGT-TCGCAGTTAATTCCAATTA-A 4435 ||| ||||| |||||||| ||||| ||| ||| ||| ||| | || || ||||| | | Sbjct 87689 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAA-TTCATACCAATAAGA 87747 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 || ||||| || | || | ||| | | ||| | || ||||||| || || Sbjct 87748 TCA-ACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 87806 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTAC---TAAGTA-TCCAAACAATAAACACG 4551 | || || | || || |||| ||||| |||| | | | | |||||| | Sbjct 87807 TTGTTGTACTCTAGG---AGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACAAG 87862 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||||||| ||| | |||||| || | ||||| ||||| |||||||| || | ||| | Sbjct 87863 CAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 87922 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | || | |||||||||||||| || || ||| |||||||| | || | Sbjct 87923 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 87982 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 |||| || || || | | | |||| | || || | ||| | || | ||| Sbjct 87983 CTTCAACAGCA-CAGAATCCAATAATTCTTTCAGCAAA-AGATCGCTCAGAATTCA-TCC 88039 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT-TGTGTATATAGCGTTAAAT 4790 |||| |||||| | ||||| || || || ||| || | | || || | ||| Sbjct 88040 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAA-ATTGCTTCAAAG 88098 Query 4791 A--ATTT-ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 | |||| || || || || | || |||||| | || || |||| ||| || Sbjct 88099 AGCATTTGACGTTCTTTAATT---TCAGTAATATATCTATCAATAAGTAATGAATAAGTT 88155 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 ||| |||||| | ||| |||| || ||||| | ||| | ||||||||| | || | Sbjct 88156 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 88215 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 || | ||| || || || || |||||||||| | || ||||| ||||| || ||| Sbjct 88216 TGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGCA 88275 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT---TAAGTTTTTTCCAG 5024 || || || ||||||| ||||| | | || ||||| | |||| ||| ||| Sbjct 88276 AAGAATGCTAAAACATATTTGATAAAATG-TCTT--TCAGGGTCTTTAAGACTTTCCCAA 88332 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 | ||||| | ||| ||||| ||||||| | ||||||||||||||| |||||| Sbjct 88333 TCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTT 88392 Query 5085 TTGTACATAGACCAAATATC 5104 || ||||| ||||||||||| Sbjct 88393 TTATACATTGACCAAATATC 88412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049506315994