Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 379 3e-100 >seq2 Length=1262744 Score = 379 bits (420), Expect = 3e-100 Identities = 1186/1814 (65%), Gaps = 28/1814 (2%) Strand=Plus/Minus Query 76817 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCA 76875 || ||| || || || ||||||||||| |||| || || |||||||| || | | Sbjct 371597 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 371538 Query 76876 GTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAG 76935 |||| || | ||| || | |||||||| |||| || || |||| | | | Sbjct 371537 CTTTGCAA-AGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATG 371479 Query 76936 CTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGA 76995 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || Sbjct 371478 GACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTAT 371419 Query 76996 AAA-CTTGTTTGATATCATCTGGAAGGTT---TGTATTTTGAATGGAACCACCATCTGAT 77051 ||| || | | ||||| || |||| | | ||||||||||| ||| || || Sbjct 371418 AAAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATGCTGCCATTATTTGCA 371360 Query 77052 ATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGA 77111 ||||| | | ||| | ||||| ||| || |||| |||| | | || | | Sbjct 371359 ATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAA 371300 Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 || ||||| |||| || || ||||| | |||||||||| ||||| || |||| Sbjct 371299 TGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGGTA 371240 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 |||| || | | |||||||| || |||||||| | ||| || || |||||||| || Sbjct 371239 AATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGA 371180 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 77291 | | |||| | ||| | | ||||||| | || ||||||| || | | |||| Sbjct 371179 GATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCCAA 371120 Query 77292 TCCCAAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 || ||||| | || ||| ||| |||| | ||| |||||| ||| || ||||| Sbjct 371119 TCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTC 371060 Query 77349 GCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCT 77408 ||| || || ||||||||| || || || | | |||| || || ||||| || || Sbjct 371059 GCAGGCGAACCGGAATATGTTTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCG 371000 Query 77409 TCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATA 77468 || | ||| | ||||| || ||| ||||| | ||||| | | | ||| | | Sbjct 370999 TCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCA 370940 Query 77469 CTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528 || |||| | | | | ||||| ||||| | || |||| ||||| || Sbjct 370939 GACTCGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 370880 Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCT 77588 | || | |||||| ||| || ||||| ||| | || |||||| || ||| Sbjct 370879 AATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCA 370820 Query 77589 ATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648 || | |||||| | ||| || || || || || || |||| ||| ||||||| Sbjct 370819 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 370760 Query 77649 AA--TCTTCC-ATCTATAACAAACA-TGTTCAAAG--CTATAGATGCTAGATTACAAACT 77702 || |||| || | || ||| | | || ||| | ||||| || |||||||| || Sbjct 370759 AACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACG 370700 Query 77703 GCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATA 77762 || || || | | | | | |||| ||| || || || |||| ||||| | ||| Sbjct 370699 GCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATA 370640 Query 77763 GTGCCCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGG 77821 || |||| ||||| ||||| || || |||| ||| | || |||||| |||||| || Sbjct 370639 GTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCA-TCTTTATAACAAATAAATGG 370581 Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT 77881 ||||| || ||||| || | | | || | ||| | | ||| || || |||| Sbjct 370580 TGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT-TCAT 370524 Query 77882 AGATTTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTC 77937 | ||| || |||| | | | ||||| | ||||||| | ||| ||||| | Sbjct 370523 CGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGC 370465 Query 77938 CCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTT 77997 |||||||||| | |||||| |||||||| ||||||||| | | ||| || ||| | Sbjct 370464 CCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCT 370405 Query 77998 CCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC 78057 || ||||| || ||| || |||||||| | ||| || ||| ||| ||||| || || Sbjct 370404 TCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATC 370345 Query 78058 TATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCC 78117 | ||||| ||||| |||||| | | || | |||||| | || |||| |||| Sbjct 370344 TCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCC 370285 Query 78118 ATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATC 78177 | || || | ||| ||||| || | || || || || || ||||| ||||| | Sbjct 370284 ACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACC 370225 Query 78178 TGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTC 78237 | || |||| ||||||||| | || ||| ||||| | || |||||| | |||||||||| Sbjct 370224 TAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTC 370165 Query 78238 CAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCA 78297 | |||||| ||| || | | ||||||||| | | | ||| | || || || Sbjct 370164 CTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAG 370105 Query 78298 TCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCA 78357 ||||| || ||||| | | ||| || ||||||| | ||| || || Sbjct 370104 TCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTG 370045 Query 78358 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATG 78417 || | || | |||||| ||||||||| | | ||| |||| |||||| | || Sbjct 370044 GAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTG 369985 Query 78418 TCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATT 78477 | || | |||||| ||||| |||||| || | | | |||||||||| || | || Sbjct 369984 TGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTT 369925 Query 78478 CTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAA 78537 | || || | |||||| || | || ||||||| | ||| || |||||||| | Sbjct 369924 CAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCA 369865 Query 78538 CCGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596 | || || | ||||| || ||| || ||| |||| | |||||| || ||||||| Sbjct 369864 CAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAA 369806 Query 78597 TTGTATGAAAAGTC 78610 | |||| ||| || Sbjct 369805 TCGTATTCAAAATC 369792 Score = 206 bits (228), Expect = 4e-48 Identities = 586/885 (66%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 47826 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 || |||||| ||| |||||||| ||||||||||||| || | || ||||| || Sbjct 87541 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 87600 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| |||| | ||| ||| ||||| ||||||| |||||| | || || Sbjct 87601 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 87660 Query 47943 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTT 48001 |||||| || |||| || | ||| | |||||| ||||| ||||| |||||| Sbjct 87661 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 87719 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTG 48061 ||| | | ||||||| || ||||| | ||| || |||| || |||||| | | Sbjct 87720 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 87779 Query 48062 TTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATAC 48119 ||| | ||||| || ||| || |||| || || | |||| | Sbjct 87780 TTCAACTTCAACAGCTTCTGATATGATT--TGTT---GTACTCTAGGAGCTGGTAATTTA 87834 Query 48120 AACAAATG---TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 || | | |||| | |||||||| ||||||||| ||| ||||||||||| | |||| Sbjct 87835 AATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTA 87894 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||| Sbjct 87895 ATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATT 87954 Query 48237 GCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | | | |||| | |||||||| | || ||||| || || ||| | ||| ||| || Sbjct 87955 G-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTC 88013 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTA 48351 | || ||| | | || || || || |||||| || || ||||| |||| Sbjct 88014 AGCAAAA----GATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTA 88069 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGT 48411 || || || || | |||||| | | ||| || | || ||| | Sbjct 88070 CAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATAT 88129 Query 48412 AAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 | |||| || | || || ||| |||| || || | |||||| | ||| ||||| Sbjct 88130 ATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAA 88187 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 | ||| | ||| ||||| | || |||| || || || | | || || || Sbjct 88188 AGCATAATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 88247 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 || | || || |||||||| |||||||| |||||||| |||| ||| ||||||| | | Sbjct 88248 TTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCT 88307 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | | || | | ||| || | |||||| || ||| | |||||||| Sbjct 88308 TTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGT 88367 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 |||||| || || || |||||||||||||| ||| ||||| Sbjct 88368 AACCCAAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 88412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668643699520