Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7 181 2e-40 seq1 152 1e-31 >seq7 Length=814761 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | | ||| | |||||| || |||||||| ||||||||||||| Sbjct 516090 ACCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 516031 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||||||| |||||| || |||||||| ||||||||||| ||| || Sbjct 516030 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGG 515971 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||| |||||||| || || | || || || || |||| || || Sbjct 515970 GATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAAC 515911 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | |||||| ||||| || ||||||||||||||||| |||||||| Sbjct 515910 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 515863 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||||| |||||||| |||| || || | |||||||||| |||| Sbjct 515837 TGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGT 515778 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||||||||| ||| || || || ||||| ||||| |||||| Sbjct 515777 TTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTT 515718 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || || || |||| ||| ||||| | |||||| ||||| || ||| Sbjct 515717 GCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 515658 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 ||||||||||| || |||||||| || Sbjct 515657 AAAGTCTTAACAAAAATCTGCATATT 515632 Score = 131 bits (144), Expect = 4e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || |||||||||||||||||||| ||| || || || ||||| ||||| ||||| Sbjct 516678 TTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTT 516619 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| || || | || || || || |||| ||| ||||| | |||||| ||||| || || Sbjct 516618 TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGT 516559 Query 283076 CAAAGTCTTAACGAATATCTGCATTTT 283102 |||||||||||| || |||||||| || Sbjct 516558 CAAAGTCTTAACAAAAATCTGCATATT 516532 Score = 113 bits (124), Expect = 9e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||||| |||||||| |||| || || | |||||||||| |||| Sbjct 516805 TGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGT 516746 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||||||||| ||| || || || ||||| ||||| |||||| Sbjct 516745 TTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTT 516686 Query 283017 GCTTT 283021 || || Sbjct 516685 GCCTT 516681 >seq1 Length=1288507 Score = 152 bits (168), Expect = 1e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||| | ||| || ||| || || ||||| |||||||||| || || | ||||| || Sbjct 547535 TACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACCATCTTC 547594 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | ||| || || |||||||||| ||| ||||| ||| |||||||||||||| || || Sbjct 547595 CAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCCTTATCCTG 547654 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||||||| ||||| | || ||||| || |||| ||| ||||| | ||||| ||||| Sbjct 547655 GATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTCTT 547714 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| || || || || ||||| ||| Sbjct 547715 TCCTGTTAAAGTTTTGACAAAAATTTGCATCTTC 547748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738958595772