Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305335.1_202015-10- 01] 18 sequences; 9,203,314 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7 134 3e-26 >seq7 Length=814761 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | |||||||| || ||||| | || || || ||||| Sbjct 515866 CAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGAT 515925 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||||||| || || || |||||||| || || || ||| Sbjct 515926 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAACAA 515985 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | || ||||| || ||||| | || || ||| | Sbjct 515986 CGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAACATT 516045 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || | ||| | || |||||||||||| Sbjct 516046 CAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGA 516084 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | |||||||| || ||||| | || || ||| ||||| Sbjct 515638 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 515697 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||||||| || || ||||||||||| || || || ||| Sbjct 515698 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAA 515757 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | || ||||| || ||||| | ||||| ||| | Sbjct 515758 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATT 515817 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || | || | || ||||||| ||| Sbjct 515818 CAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGA 515856 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | |||||||| || ||||| | || || ||| ||||| Sbjct 516538 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 516597 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||||||| || || ||||||||||| || || || ||| Sbjct 516598 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAA 516657 Query 178044 CGACTTATCTTCGCCGGAAAA 178064 || | ||||| || |||||| Sbjct 516658 CGTTTGATCTTTGCAGGAAAA 516678 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||||||| || || ||||||||||| || || || ||||| | ||||| || ||||| Sbjct 516686 AAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAA 516745 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||| | || ||||| || ||||| | ||||| ||| | |||||||| || || | || Sbjct 516746 ACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACA 516805 Query 178124 TCTTGTTTTGAGACTCAGA 178142 | || ||||||| ||| Sbjct 516806 CTTAGTCCTGAGACTTAGA 516824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730922389492