Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 >seq2 Length=1232092 Score = 154 bits (170), Expect = 2e-32 Identities = 564/863 (65%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || |||| ||| | |||||||||||||||||||| || | | || ||| | Sbjct 90185 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 90244 Query 15972 CCATAAAATCAAAGGGATTAGTA--GCTGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| ||||||| ||||||| | | || | || | || || || || || | || Sbjct 90245 CCATCCAATCAAAAGGATTAGAAACGTTGTAGAT-TTTTGGAATATCCAAG-GCAAAAAG 90302 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AATTAATTCCTATAA 16088 ||||||||| || |||||||| |||||||| || |||||| | |||| || || |||| Sbjct 90303 TAATCTATCAGCAACAAATTCAATATATTGGGCCA-TAAGTCTCGAATTCATACCAATAA 90361 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | || ||||||| | | ||| | | ||| | |||| |||||| |||| Sbjct 90362 GATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 90421 Query 16149 TATCGGTG-GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCG 16207 | | | || ||| | | | | || || ||| |||| | |||| ||| || Sbjct 90422 T-TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCA 90480 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 || || ||| || ||||| || | || |||||||| || ||||| || | || ||| Sbjct 90481 AAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGC 90540 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || ||| ||||| || | ||| || || ||| ||| || ||||| | || || Sbjct 90541 ATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTCCT 90600 Query 16328 TCAACAGATGCAAAAGCGATTAA-TCGTTCCGCGTACG-TAGCATCTTTATTACGAATCC 16385 ||||||| || || | | ||| || ||| || | | | || || ||| |||| Sbjct 90601 TCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAGATCGC-TCAGAATT---CATCC 90655 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 |||| | ||||||| ||||| | ||||| | || || || || | ||| | Sbjct 90656 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAAAGA 90715 Query 16446 --ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503 |||| | ||| | ||| || | ||||| ||||||| ||||| || |||| Sbjct 90716 GCATTTGAC--GTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTTTC 90773 Query 16504 TGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTG 16563 ||||| | || || | || ||||| |||| | || ||| |||| |||||| Sbjct 90774 ACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATTTG 90833 Query 16564 TACT--TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || | || | | ||| | | | || | ||| || | || ||||| |||||||||||| Sbjct 90834 TATTTCTCTAAGGAAATT--TACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGCA 90891 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTC---GTCAGATGTAAGAATATGCCAA 16678 || || || || | | || || |||| | |||| ||| | ||||| | | |||| Sbjct 90892 AAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTC---TTTAAGACTTTCCCAA 90948 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 ||| | ||||| || ||| | |||||| | |||||| || | || ||| Sbjct 90949 TCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTT 91008 Query 16739 TTATACATTTTCCAAATATCATT 16761 ||||||||| ||||||||| || Sbjct 91009 TTATACATTGACCAAATATCTTT 91031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414284931760