Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 367 1e-96 >seq2 Length=1232092 Score = 367 bits (406), Expect = 1e-96 Identities = 1211/1855 (65%), Gaps = 56/1855 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| ||| || || || || || || | |||||| || || ||| Sbjct 373554 TCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTT 373495 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| || |||||||||||| | | ||||| | ||| ||| Sbjct 373494 TTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTT 373435 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || ||| ||||| |||| | | | | ||| || || || ||||| Sbjct 373434 TCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATA 373375 Query 36970 TCTAAAATACATTTTTGAGAT--ATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || ||| | || | | || ||||| || || ||||| | | ||||| | Sbjct 373374 TC--AATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGTATATCTT 373317 Query 37028 CTGGTAAATCTAA----ATGTTGAATAGAACCATTATGTAACACAATTGTATTCT--TTA 37081 | || || | ||| || ||||||| ||||||| | |||| |||||| ||| Sbjct 373316 CCGG-AATTGTAAGTATATTTTGAATACTGCCATTATTTG---CAATAATATTCTGCTTA 373261 Query 37082 TGTCATTATTCCACATATTTCTA-CT-TATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | | | ||| |||| | | || || || || | | | || |||||||| || Sbjct 373260 AGCCTATCATCC-CATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTAC 373202 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGA 37199 || || ||||||| |||||| | ||| || || ||| |||| |||| Sbjct 373201 AAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACT 373142 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 |||||| |||| ||| ||||| || || ||||| || |||||||| | ||||| || Sbjct 373141 CTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGA 373082 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 ||| | | |||||| | ||| || | ||| || || |||||| || || || Sbjct 373081 ATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACA-AAGTCCAG 373023 Query 37320 TGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGT 37375 | | | |||| ||||||||| |||||| |||||| |||||||| || ||| || Sbjct 373022 AGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGG 372963 Query 37376 TATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCAT 37435 |||||| || || || ||||| ||| || || || || |||| || || || |||| Sbjct 372962 AATATGTTTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCAT 372903 Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CA 37494 |||| || ||| ||||||||| ||||||| | || ||| | || ||| | | || Sbjct 372902 AATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTACGGCA 372843 Query 37495 TAGCCCAATAAT-ATAAACACA-TCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 || | || || ||||| ||| || || | || |||| || || || | || | || Sbjct 372842 TA--CGAAGCATCATAAA-ACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGAT 372786 Query 37553 GTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612 || | ||| ||| | | ||| | | | |||||| | || || | ||||| Sbjct 372785 GTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTAT 372726 Query 37613 TTAGATTTTTAACTAGTATT----TTCGTAATTATTCTCAACTTGTCGAACATAAATACG 37668 | | ||| || ||| | ||||||| | | | ||||| || || || || ||| Sbjct 372725 TCAAATTC----CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA-ATCAA-ACG 372672 Query 37669 T--------TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 | | |||| ||| ||||| | |||||| | |||||||| || |||| Sbjct 372671 TCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAA 372612 Query 37721 CTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTC 37780 |||| || | || | ||| ||| || ||||| || | ||||| || ||| |||| Sbjct 372611 CTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTC 372552 Query 37781 CCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTC 37840 ||||||| | || || ||| |||| || ||||||||| ||| | || || | Sbjct 372551 CCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCC 372492 Query 37841 CTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGCT 37899 | || |||||||||| | || | ||| || |||| ||||| | ||| | Sbjct 372491 CCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCA---TCGTT 372436 Query 37900 TTAAttttttt-CTTTGTTTCGTATTCTAT--ATATAATTTGTTAAAATCATTCCCCCAT 37956 || || | ||||||| || || | ||||| || |||||||||| ||||| Sbjct 372435 TTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAA 372376 Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||||| ||||| ||||| ||| |||||||||| ||| |||| ||| || || Sbjct 372375 ACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCA 372316 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || | |||||| || | |||||| ||||| | |||| ||| | ||| ||| Sbjct 372315 ACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATC 372256 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGT 38136 ||||| || || |||||| || | | ||| || | | |||| ||||||| || Sbjct 372255 TCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGC 372196 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || | |||||| | || || ||| | || | || || |||| |||||| ||| | Sbjct 372195 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 372136 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 |||| |||||| | | | ||| || | || ||||||||| | || ||| | || Sbjct 372135 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 372076 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 ||||| | ||| | ||| |||||||| | | || || | ||||| ||| || || Sbjct 372075 ATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCA-GTCTT 372017 Query 38317 GATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || | ||||||| ||| || ||||| ||||| | ||| || || || Sbjct 372016 ACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAAT 371957 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 |||| ||||||| ||||||||||| |||||| || | ||||| | ||| || Sbjct 371956 CCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGG 371897 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTAT 38495 | |||||| | || |||||| ||| || | | ||||||||| | | || | || || Sbjct 371896 TGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAAT 371837 Query 38496 ATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTAT 38555 |||||| | |||||||| ||| |||| ||| || | ||||||||||||||| | | Sbjct 371836 ATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAAC 371777 Query 38556 TTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 ||| || | |||||| ||||| ||| |||||| ||||| | |||||||| Sbjct 371776 TTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAA 371722 Score = 226 bits (250), Expect = 3e-54 Identities = 590/874 (68%), Gaps = 38/874 (4%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||||| ||||| |||||| || ||||| ||||||| ||||| ||| | Sbjct 90185 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 90244 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | |||||||||| | || ||| ||| |||| | | | || | | || Sbjct 90245 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 90304 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 ||||||| || || ||||| ||||| || | ||| | | |||||||||| ||||||| Sbjct 90305 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAATTCATACCAATAAGAT 90364 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| || | | |||| || | |||| | | ||| || || |||| || Sbjct 90365 CAACAGGAAGAG--AGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGAT-AT 90419 Query 11578 CGAC--GTTATAACTTCCTTAGATGGTGGATGTAA---TAAATG-TTTAAACATTAAACA 11631 || ||| || || || |||| || ||| ||| | |||| | |||||||| Sbjct 90420 -GATTTGTTGTA-CTCTAGGAGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACA 90476 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||||||| ||| | |||||| || | ||| || ||||||||||||||||| | ||| Sbjct 90477 AGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 90536 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| | ||| |||||||| | |||||| || ||| ||| ||||||||| | || Sbjct 90537 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 90596 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-ATCC 11810 ||| || ||||| ||| | | | |||||| || | | | | | | | |||| Sbjct 90597 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCA-AAAGATCGCTCAGAATTCATCC 90655 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | ||||| || |||||||||||||| ||| || || || | ||| | Sbjct 90656 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAAAGA 90715 Query 11871 AATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 |||||| |||| || | || | | |||| |||| || | ||| ||| ||| Sbjct 90716 ---GCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 90772 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACAC 11986 | ||| || | ||| |||| |||||||| |||| | ||| || || || | Sbjct 90773 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTAGCTTCCGGTATT 90831 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 |||| || | | |||| || | ||||| || || | |||||||||||||| | || Sbjct 90832 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGC 90890 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCA 12102 ||| ||||||| | || ||| ||||| | | |||| ||||||| | | ||||| Sbjct 90891 AAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTA---AGACTTTCCCA 90947 Query 12103 ATCATCTA-AATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 ||| |||| ||||| || ||| | ||||||| |||||| || | | || Sbjct 90948 ATC-TCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTT 91006 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAAT 12195 |||||||||| ||| ||||| | || ||||| Sbjct 91007 TTTTATACATTGACCAAATATCTT--TAATTAAT 91038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524694581920