Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 282 4e-71 >seq2 Length=1232092 Score = 282 bits (312), Expect = 4e-71 Identities = 598/872 (69%), Gaps = 33/872 (4%) Strand=Plus/Plus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||||||||| |||||| ||||| ||||||||||||||||||| ||||| ||| | Sbjct 90185 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 90244 Query 13642 CCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGT 13700 |||| ||||||| ||||| | || | | | ||| | | | | | || ||| Sbjct 90245 CCATCCAATCAAAAGGATT-AGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGT 90303 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13759 ||||||||||||| ||| ||||||||||| | ||| || || | |||||||||| || || Sbjct 90304 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAAG 90362 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||||||| | | | || ||| | | |||| | ||||| ||| ||| | Sbjct 90363 ATCAACAGGAAG-AGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 90421 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAAC 13872 | |||| || ||| || || || | |||| || |||| | ||||||| Sbjct 90422 T--TTGTTGTACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAAC 90475 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | ||||||||| ||| || || ||||| | |||||||||||| || |||||||| | || Sbjct 90476 AAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTC 90535 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 | ||||| | ||| |||||||| | |||||| |||||| ||| || ||||| | | Sbjct 90536 CAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAA 90595 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14052 |||| ||||| ||| || | || | || ||| |||| ||| | ||| | Sbjct 90596 TTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATTC---A 90652 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||||| | |||||||| | ||| ||||| | | || || ||| || | || Sbjct 90653 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAA 90712 Query 14113 ATA-AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | | || | | | |||||| | | ||| ||| ||||||||||||| ||| || Sbjct 90713 AGAGCATTTGACGT-TCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTT 90771 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||| ||||| | ||| |||| || |||||| ||||| | ||||||||||| | Sbjct 90772 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 90831 Query 14232 TGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 |||| ||| | | |||| || | || || ||||| |||| ||||||||||| || || Sbjct 90832 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGC 90890 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCA 14347 ||| ||||| || | | ||| ||||| || || |||| | || || ||| ||| Sbjct 90891 AAAGAATGCTAAAACATATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCA 90947 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA-GCGACAGCTT 14406 ||| ||| | | ||||| | ||| || | | || ||||| | || |||||| Sbjct 90948 ATCTCTAGTATCTTGACTTAGATCAATTTCTTC-AGTAACCCAAAACGACGCTTCAGCTT 91006 Query 14407 TTTTATACATTACCCATATTTCTTTATATAAT 14438 ||||||||||| ||| || |||||| |||| Sbjct 91007 TTTTATACATTGACCAAATATCTTTAATTAAT 91038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727892061200