Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 298 7e-76 >seq2 Length=1232092 Score = 298 bits (330), Expect = 7e-76 Identities = 1183/1849 (64%), Gaps = 26/1849 (1%) Strand=Plus/Minus Query 70800 TGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAG 70859 |||||| || ||||| | ||| || || | || ||| || |||||||||||||| Sbjct 373549 TGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTAG 373490 Query 70860 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTAT 70919 ||| |||| || |||||||||||| | || || | | || ||| || | || Sbjct 373489 ACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCAT 373430 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||||| |||| || || |||| | | | ||||| ||||||||||| | || Sbjct 373429 ATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAAT 373370 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA 71038 | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| |||| Sbjct 373369 TACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGAA 373311 Query 71039 -GGT--TTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095 || | |||| ||||| ||| || ||||||||| | | || | | |||| Sbjct 373310 TTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCAT 373251 Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155 |||||| ||| |||| | | || | ||| ||||| ||||| || || | Sbjct 373250 CCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCAC 373191 Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTC 71215 |||| | |||||||||| ||||| || |||| | || || | |||||| || | Sbjct 373190 CAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTAC 373131 Query 71216 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | |||||||| | ||| ||||| || ||||| || | | |||||| ||| | || || Sbjct 373130 CTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATAC 373071 Query 71276 CATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA---TGGTAC 71330 ||||| | || || ||||||| || | ||||||| ||||| | || |||| Sbjct 373070 CATGT--TTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTGT 373013 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATC 71390 ||| || || ||||| || || || | |||||| || Sbjct 373012 AACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTC 372953 Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 |||||| || | |||||| || || ||||| || || || | ||| ||||||| || Sbjct 372952 GTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAAC 372893 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG- 71508 ||| ||||| | ||||| | | | ||| || || | || ||| ||| Sbjct 372892 TTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTACGGCATA--CGAAGC 372835 Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 | ||||| |||||| | ||||||| |||||| || | || | ||||| ||| Sbjct 372834 ATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTC 372775 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || ||| | ||| | || |||||| || || || | |||||| | ||| || Sbjct 372774 GATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTC 372715 Query 71629 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCTCCCATCTATTACAA 71686 || || || || || |||| || ||||||||| ||| | ||| | Sbjct 372714 GTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCA 372655 Query 71687 ACACGTT---CAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 || || |||| ||| ||| ||||||||||| ||||| || || | | | Sbjct 372654 ACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTAGTG 372595 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| ||| ||||| ||||| | ||||| | || ||||| ||||||| || ||| Sbjct 372594 TATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGTTA 372535 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || || | || ||||| |||||| |||||| || || || || ||||| |||| Sbjct 372534 CTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCC 372475 Query 71863 TCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCT 71921 | || || ||| | | || | || || || | ||| | | || | | Sbjct 372474 TGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTT 372416 Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981 || || | | ||||| | || || || |||||| ||| | ||||| || Sbjct 372415 CTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCA 372356 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATC 72041 ||||| || ||||| | | ||| ||| ||| | | |||| || ||| || ||||| Sbjct 372355 TTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATC 372296 Query 72042 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 ||||| |||||| || ||| ||||| | ||| ||| || ||||| |||||| Sbjct 372295 AGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTT 372236 Query 72102 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 | | || | ||| | | || |||| |||||||| ||||| || || || || | Sbjct 372235 CCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGC 372176 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 || || || ||| || ||||| || || ||||| |||| ||||||||| | || Sbjct 372175 ACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAG 372116 Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 72281 ||| ||||| | ||||| ||| ||||| || || ||||| ||| | | | Sbjct 372115 CATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCT 372056 Query 72282 AATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 |||||| || | || | || | || || || | ||| || ||||||| | Sbjct 372055 AATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATTTAGT 371996 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 || || ||| |||| || | ||| ||| || || | |||| |||||| || Sbjct 371995 TAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGA 371936 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 72461 |||||| | || ||| || | |||||| | || || | || || ||||| |||| Sbjct 371935 CATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTT 371876 Query 72462 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTAC 72521 || || | | | || || |||| || | ||| ||||| | ||| || || Sbjct 371875 TTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAATACCACA 371816 Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581 | ||| ||||| | | ||| || |||||||| || | ||||| | ||||| || || Sbjct 371815 AGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTT-AAGAA 371757 Query 72582 G-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 | |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 371756 GATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 371708 Score = 224 bits (248), Expect = 1e-53 Identities = 598/893 (67%), Gaps = 43/893 (5%) Strand=Plus/Plus Query 41749 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 90156 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 90215 Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 ||||| || |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 90216 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 90275 Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925 |||||| || |||| || ||| |||||||| || | ||||| |||||| Sbjct 90276 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 90335 Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 90336 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 90395 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 42041 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 90396 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 90449 Query 42042 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCATCTCTAC 42098 | | | || | |||| | || ||||| || ||||| ||| || ||||| ||||| | || Sbjct 90450 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 90508 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 90509 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 90568 Query 42159 TAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 | | | |||| | | |||||||| | |||||||| || || || |||||| ||| Sbjct 90569 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 90627 Query 42218 TCTCCATAA-CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 42276 || || || || | | || ||||| || ||||| || || ||||||||||| Sbjct 90628 TCAGCAAAAGATCGCTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 90686 Query 42277 ACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAA 42332 | || || | || || | |||||| | ||| ||| | || ||| Sbjct 90687 A----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAA 90742 Query 42333 CATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 |||| |||| || | || || ||| |||| ||| || | |||||| | ||| || Sbjct 90743 TATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTG 90800 Query 42391 AAATCCGTAGAAACA-TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTA 42449 ||| | || | ||| ||| || || | | |||| |||| || || | | |||| Sbjct 90801 AAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTA 90859 Query 42450 AATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 | ||||| | || || || ||||| || ||||| || || || |||| ||| ||||||| Sbjct 90860 AGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAAT 90919 Query 42510 ATTTTTCGTCCGGTGTT--AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 42567 | |||| ||| || | | | |||||| | |||||| | || ||| | ||| Sbjct 90920 GTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTC 90977 Query 42568 TTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 ||| || | |||||| || ||||| || ||||||||||| ||| ||||| Sbjct 90978 TTCAGTAAC--CCAAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 91028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139048993680