Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 307 1e-78 >seq2 Length=1232092 Score = 307 bits (340), Expect = 1e-78 Identities = 1198/1858 (64%), Gaps = 44/1858 (2%) Strand=Plus/Minus Query 61994 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62052 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 373549 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 373491 Query 62053 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 373490 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 373431 Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 373430 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 373371 Query 62173 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62231 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 373370 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 373312 Query 62232 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62288 | || | |||| ||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 373311 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 373252 Query 62289 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62348 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 373251 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 373192 Query 62349 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62408 ||||| | |||||| ||| ||||| || |||| | || || | |||||| || Sbjct 373191 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 373132 Query 62409 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62468 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 373131 CCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 373072 Query 62469 CCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTA 62523 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 373071 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 373014 Query 62524 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62583 ||| ||||| |||||| ||||| || ||| || |||||| | Sbjct 373013 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 372954 Query 62584 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62643 ||||||| || | || || || || ||||| || || || | || | ||||| || Sbjct 372953 CGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 372894 Query 62644 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTA 62700 ||| || || | ||||||| | | ||| | ||| | || | || ||| | Sbjct 372893 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 372838 Query 62701 AG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62759 || | ||||| ||| || | ||||||| ||||| || | || | |||||| | Sbjct 372837 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 372778 Query 62760 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62819 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 372777 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 372718 Query 62820 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TT 62876 || ||| || || || || || | || ||||||||| || | || || Sbjct 372717 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTT 372659 Query 62877 ACAAAC--ATGTT-CAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62932 | ||| || || |||| ||| ||| ||||||||||| ||||| || || | | Sbjct 372658 ATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCT 372599 Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992 | |||| ||| || || ||||| | ||||| | |||||||| ||||||| || Sbjct 372598 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 372539 Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| || Sbjct 372538 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 372479 Query 63053 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63112 || | || || ||| | | || ||| | || | ||| || | | Sbjct 372478 AGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTT--TCATCGTTTTCCTTCCACGGCC 372422 Query 63113 -TCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 | |||| ||| | | ||| | | || || || |||||||||| | |||||| Sbjct 372421 TTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCC 372362 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCAT 63226 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 372361 CCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCAT 372305 Query 63227 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 || |||||||||| |||||| || ||| ||||| | ||| || || ||||| Sbjct 372304 GAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCC 372245 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 |||||| | | || | ||| | | || |||| |||||||| ||||| || || Sbjct 372244 GTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAAT 372185 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || || | || || || ||| || ||||| || || ||||| |||| |||||| Sbjct 372184 TGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATA 372125 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 ||| | || ||| ||||| | || || ||| | ||||| || || ||||| || Sbjct 372124 AACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACC 372065 Query 63467 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 | | | | ||||||||| | || | || | || || || | ||| || ||| Sbjct 372064 AGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGC 372005 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 |||| ||| |||||| ||||||| | ||| ||| || || | |||| ||| Sbjct 372004 GCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAA 371945 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 ||| |||||||| | || ||| || | |||||| | || || | || || || Sbjct 371944 ACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGT 371885 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706 ||| |||||| || | | | || || |||| || | || ||||| | ||| Sbjct 371884 AAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATG 371825 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 ||| || | ||| ||||| | | || || |||||||| || | ||||||| || Sbjct 371824 AATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAAT 371765 Query 63767 TTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823 ||| || ||| |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 371764 TTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 371708 Score = 223 bits (246), Expect = 4e-53 Identities = 589/881 (67%), Gaps = 45/881 (5%) Strand=Plus/Plus Query 32989 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 33045 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 90157 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 90216 Query 33046 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 33105 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 90217 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 90276 Query 33106 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTC 33165 |||||| || |||| || ||| |||||||| || || ||||| |||||| | Sbjct 90277 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 90336 Query 33166 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 33225 || | | ||||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 90337 ATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 90396 Query 33226 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 33285 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 90397 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 90447 Query 33286 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 33335 |||| | ||| | || ||||| || ||||| ||| || ||||| || || | Sbjct 90448 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACG 90506 Query 33336 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 33395 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 90507 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 90566 Query 33396 TATGGAAGCGAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33454 || | | | || | | |||||||| | |||||||| || ||| || |||||| || Sbjct 90567 AATTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 90625 Query 33455 TCTCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 33513 | || || || |||| || ||||| || ||||| || || ||||||||| Sbjct 90626 TTTCAGCA-AAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTT 90684 Query 33514 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33569 ||| || || | || || | |||||| | ||| ||| | || | Sbjct 90685 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGT 90740 Query 33570 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33627 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 90741 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 90798 Query 33628 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGC 33686 ||||| | || | ||| |||||| || | || |||| |||| || || | | || Sbjct 90799 TGAAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGC 90857 Query 33687 CAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 || ||||| | || || || ||||| || ||||| || || || |||| ||| ||||| Sbjct 90858 TAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAA 90917 Query 33747 ATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACT 33804 || | |||| ||| || || | | |||||| | |||||| | || ||| | | Sbjct 90918 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATT 90975 Query 33805 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||||| |||||| || || || || ||||||||||| Sbjct 90976 TCTTCAGTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 91016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947059836880