Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7 138 1e-27 >seq7 Length=886684 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| | ||||| ||| | || Sbjct 559322 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 559381 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || ||||| | ||| || || ||||| || |||||||| || Sbjct 559382 GATACAATTGAGAATGTTAAGGCAAAGATTCA-AGATAAGGAAGGAATCCCACCTGATCA 559440 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || ||||||||||| |||| | | ||| | |||||||| Sbjct 559441 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 559500 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||||| ||||| |||| ||||| || || || ||||| |||| Sbjct 559501 CATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGCGGAA 559550 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | ||||| || | || Sbjct 558866 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 558925 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || ||||| | ||| || || ||||| || |||||||| || Sbjct 558926 GATACAATTGAGAATGTTAAGGCAAAGATTCA-AGATAAGGAAGGAATCCCACCTGATCA 558984 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || ||||||||||| |||| | | ||| | |||||||| Sbjct 558985 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 559044 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| ||||| |||| ||||| || || || ||||| || Sbjct 559045 CATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGTGG 559092 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| | ||||| ||| | || Sbjct 559094 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 559153 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || ||||| | ||| || || || || || |||||||| || Sbjct 559154 GATACAATTGAGAATGTTAAGGCAAAGATTCA-AGATAAGGAGGGAATCCCACCTGATCA 559212 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || ||||||||||| |||| | | ||| | || ||||| Sbjct 559213 ACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 559272 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || |||||||||| | || || ||||| || Sbjct 559273 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGAGGTGG 559320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327904938670