Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12 246 2e-59 seq4 242 3e-58 seq9 165 7e-35 seq7 123 2e-22 seq10 122 7e-22 seq1 116 3e-20 >seq12 Length=162451 Score = 246 bits (272), Expect = 2e-59 Identities = 579/864 (67%), Gaps = 25/864 (3%) Strand=Plus/Plus Query 551749 TATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTG 551808 || || | ||||||||| | ||| || |||||| ||| ||| |||| | |||| Sbjct 148364 TAACTATTGAAGATGGTATTTTTGAAGTTAAAGCTACCGCTGGTGATACTCACTTGGGTG 148423 Query 551809 GCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGAAGATTTTAAACGAAAAAACA 551868 | |||||||||||||| ||||| ||| || ||||| ||||||| || |||| || | Sbjct 148424 GTGAAGATTTTGATAACAGACTCGTAGAATTCTGTGTACAAGATTTCAAGAGAAAGAATA 148483 Query 551869 AAGTT---GATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAA 551925 || | ||| || | ||| ||| | |||| | | | || |||||| ||||| Sbjct 148484 GAGGTATGGATTTAACCACAAATGCTAGAGCTTTAAGAAGACTCAGAACTCAATGCGAGC 148543 Query 551926 GAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTG 551985 | || || || || | |||||| ||||||| | || ||||| |||||||| | | || Sbjct 148544 GTGCAAAGAGAACTTTGTCATCTTCTACTCAAGCTACAATTGAGTTAGATTCACTCTATG 148603 Query 551986 AGGGAATTGATTATA-ATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGAT 552044 | || ||||||||| | ||| || || || | ||| ||||| | || ||||| Sbjct 148604 AAGGTATTGATTATTCAGTTGCC-ATCAGTAGAGCTAGATTCGAAGAACTCTGCGCTGAT 148662 Query 552045 CTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAA- 552103 ||| | ||| | | ||||| || |||| | | ||| | || || || Sbjct 148663 TACTTCCGTGCAACTTTAGCTCCAGTTGAGAAAGTACTCAAGGATGCTGGTATGGACAAG 148722 Query 552104 --ATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 ||| |||||||| |||| | |||||||| |||||| | ||||| || ||| Sbjct 148723 AGATCT---GTACATGATGTTGTATTGGTTGGTGGTTCTACACGTATTCCAAAGGTTCAG 148779 Query 552162 GAAATG-TTAAGTTCTTATTTCAATGGTAAAAA---ATTAAATGAAAGTGTTAATCCAGA 552217 | || || || || ||| || |||||| | || || | || | |||||||| Sbjct 148780 GCCTTGATTCAGGAATTCTTT-AACGGTAAAGAGCCATGCAAAGCAA---TCAATCCAGA 148835 Query 552218 TGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA---CAAACTGA 552274 || |||||||| |||||||| || | ||||| ||||| | ||| ||| | Sbjct 148836 CGAAGCTGTTGCTTATGGTGCTGCTGTACAAGCTGCTATCTTAAATGGTGAGCAATCCTC 148895 Query 552275 TGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAAC 552334 || |||| || | || | | |||||| |||| |||| || ||||||||||| Sbjct 148896 TGCCG---TACAGGATCTCTTATTATTGGATGTTGCTCCATTATCACTCGGTTTAGAAAC 148952 Query 552335 AGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATC 552394 | ||| ||| ||||||| || ||||| || | ||||| ||||| || || || | Sbjct 148953 TGCTGGTGGTGTTATGACCAAGCTTATTGAACGTAATACAACTATCCCAGCAAAGAAGAC 149012 Query 552395 TCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGG 552454 | || || |||| ||| | ||||| || | || ||| || ||| ||| ||| || Sbjct 149013 ACAAGTCTTCACTACTTATGCTGATAACCAGAGTGGTGTCTTGATCCAAGTTTATGAGGG 149072 Query 552455 AGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCC 552514 || ||| | ||||| ||||| ||| || || | || || | || |||||||| Sbjct 149073 TGAGAGAGCCATGACTAAGGATAACCATCTCCTCGGAAAGTTCCATCTTGATGGTATTCC 149132 Query 552515 TCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 || || || | || ||||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 149133 ACCAGCACCAAGAGGTGTACCACAAATTGAAGTCACCTTTGATATTGATGCTAATGGTAT 149192 Query 552575 TTTGAATGTGACTGCTTGTGATAA 552598 ||||||||| ||||| |||||| Sbjct 149193 CTTGAATGTGTCTGCTGTTGATAA 149216 Score = 214 bits (236), Expect = 1e-49 Identities = 382/553 (69%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| ||||| |||||||| |||||||| ||||||||||| ||| ||| | || Sbjct 147747 AGCTATTGGTATTGATTTAGGTACCACATACTCATGTGTTGGTGTATGGAGAAACGATAC 147806 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || ||| || | || |||||||||||| | || || ||||| ||||| | || || Sbjct 147807 TGTAGATATTGTTCCAAACGATCAAGGTAACCGTACAACACCATCATATGTAGCATTTAC 147866 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 |||||||| | | | |||||||||||||||| | |||| || | || || || Sbjct 147867 AGAAACTGAGCGTCTTATTGGTGATGCAGCAAAGAACCAAGTTGCTAGAAACCCAGAAAA 147926 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| ||||||||||||||||| | ||||| |||| ||| ||||| | | || || Sbjct 147927 TACAGTTTTTGATGCTAAACGTCTTATTGGTAGAAAGTTTGATGATCAGGCAGTACAAAG 147986 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC--TGGAAAACCTTAT----AT 550284 ||||||| || ||||| || || | |||| | | | ||| || | || | Sbjct 147987 TGATATGACTCACTGGCCATTTAAAGTAGTTAGAGGTCCAAAGGACAAGCCAATCATCAG 148046 Query 550285 TG-AAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGG 550343 || || ||||| | | || | || |||| | ||| ||||||| |||||| Sbjct 148047 TGTAAACTACTTAGG--TGAAAAG--AAGGAATTCCATGCTGAAGAAATTTCTGCTATGG 148102 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 ||||| || ||||| | | | || | | |||| || ||| | | || | Sbjct 148103 TTTTACAAAAGATGAAGGAGATCTCTGAAGCATACTTGGGTCGCCAAATTAAGAACGCTG 148162 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 || | ||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || Sbjct 148163 TAGTTACTGTTCCAGCTTATTTCAATGACTCACAGCGTCAAGCAACAAAGGATGCAGGTG 148222 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 |||||||| | ||||| | | || || || || || ||||| ||||| |||| | Sbjct 148223 CAATTGCTGGTTTGAATGTAATGAGAATCATTAACGAGCCAACTGCAGCTGCTATTGCTT 148282 Query 550524 ATGGACTTGATAA 550536 |||| |||||||| Sbjct 148283 ATGGTCTTGATAA 148295 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 ||||||||||||| | | ||| || ||||| |||||||| ||| | || ||||| | | Sbjct 148291 CAAGACCATAAGCAATAGCAGCTGCAGTTGGCTCGTTAATGATTCTCATTACATTCAAAC 148232 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || ||| |||||| || |||||||| |||| ||||| ||||| || |||| Sbjct 148231 CAGCAATTGCACCTGCATCCTTTGTTGCTTGACGCTGTGAGTCATTGAAATAAGCTGGAA 148172 Query 361821 CAGTAATCACTGCTTTTTCAACTTG 361845 |||||| || || || | || ||| Sbjct 148171 CAGTAACTACAGCGTTCTTAATTTG 148147 >seq4 Length=891386 Score = 242 bits (268), Expect = 3e-58 Identities = 480/700 (69%), Gaps = 33/700 (5%) Strand=Plus/Plus Query 368481 TGAAACATTTAGAGAAAAAATGTTAAATAATAATTCTAAAATAAATTGGATGCCATCTAA 368540 |||| | || | ||| ||| | |||| ||||||| |||| |||||||| ||| | | Sbjct 749018 TGAATCTTTAAAAGATAAATTATTAATTAATAATGAAAAAACTAATTGGATTCCAAATTA 749077 Query 368541 TATTGGAACAAAACATTTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAG 368600 | || | |||| ||| |||||||| | ||| || | ||||||||| || | Sbjct 749078 TGTTAAAGAAAAAAGATTTCATAATTGGTTACAAGATGCTAGAGATTGGTGTGTTAGTCG 749137 Query 368601 AAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGT 368660 | | | ||||||||||| || || || ||||| ||| || ||| | | ||| Sbjct 749138 TAATCGTTTTTGGGGAACACCTATACCTATATGGGTATCAGAAGATTATACAATTATTAA 749197 Query 368661 TTGTATAGGTTCAATTAAAGAATTGCAAGAATTA---TCTGGTGTGCAAAATA------T 368711 ||||| ||| ||| ||||||| || ||| || | | || ||| | Sbjct 749198 ATGTATTGGTAGTATTGAAGAATTAAAATCTTTAGCATCCAATTTAAAAGATAAAGAAAT 749257 Query 368712 TAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCC--ATCAAAGAAAGGAAAA 368769 || |||| ||||| | || |||||| | ||| ||||||| ||| |||| ||||| Sbjct 749258 TAATGATATACATCGTCATTTTATTGATTATATTGAAATTCCTGATCCAAGA--GGAAAT 749315 Query 368770 GGTTT------ATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCT 368823 || ||| || |||||| |||||| ||||| ||||||||||| |||||| Sbjct 749316 AATTATCCACCATTAAAAAGAATTGAAGAAGTTTTTGATTGTTGGTTTGAATCTGGTTCT 749375 Query 368824 ATGCCTTATGG-TCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAA 368882 |||||||||| || | || ||||||||||||| || | ||| ||| ||||| Sbjct 749376 ATGCCTTATGCATCCATTA-ATTATCCATTTGAAAATCAAGAATTATTTAATAAT----- 749429 Query 368883 AGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATAC 368942 | ||| || | |||||||| ||| | ||||||||| | || ||||||||||| Sbjct 749430 ATATTTCCTG-CAGATTTTGTTGGTGAAGGTTTAGATCAAACAAGAGGATGGTTTTATAC 749488 Query 368943 CCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAAC 369002 || | |||||||| ||||| | || ||| |||| |||||||||||| | || || | Sbjct 749489 ATTAATGGTATTATCAACAGCATTATTTGATCAACCAGCTTTTAAAAATATTATTGTTAA 749548 Query 369003 TGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAAG--TAAGGGTAATTATTCC 369060 |||| | ||| |||||||||||| |||| ||||||||||| ||| |||||| | Sbjct 749549 TGGTTTAGTTTTAGCATCTGATGGTAAAAAAATGTCAAAAAGATTAA--AAAATTATCCT 749606 Query 369061 GATCC-TAATATTTTAATTGATAAATTTGGTGCTGATACTTTGAGATTATACCTATTGTC 369119 ||||| | | || || || |||||| |||||| ||| |||| ||||||| || | Sbjct 749607 GATCCATTAGATATT-GTTAATAAATATGGTGCAGATTCTTTAAGATTATTTTTAATTAA 749665 Query 369120 ATCACCTGTAGTAAAAGCAGAATCTATTAAATTTGATGAA 369159 ||||| || || | ||||||| || | | |||| | ||| Sbjct 749666 TTCACCAGTTGTTAGAGCAGAAACTTTAAGATTTAAAGAA 749705 Score = 123 bits (136), Expect = 2e-22 Identities = 209/300 (70%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 || ||||| || ||||| | ||| | ||||| | || || || | ||| | || Sbjct 652429 GACGTTACACCCTTATCTTTAGGTATTGAAACTTTGGGTGGAGTTTTTACTCGATTAATT 652370 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | |||||||| || || ||| |||||| | ||||| || || | |||| ||| Sbjct 652369 AACAGAAATACCACAATACCTACTAAAAAGAGCCAAGTATTCTCCACTGCTGCAGACAAT 652310 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 |||||| ||| |||| || |||| ||||||||||| |||| || |||||||| Sbjct 652309 CAAACTCAAGTTGGAATTAAAGTTTTCCAAGGAGAAAGAGAATTTGCTGCTGATAATAAG 652250 Query 552483 CAACTTGGT-ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 ||||| | ||| || | | || |||||||| || || | || ||||| ||||| Sbjct 652249 TTGCTTGGACAATTTGAAATGATG-GGAATTCCTCCAGCACCCAGAGGGGTACCTCAAAT 652191 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || || ||||| ||||| ||||||||| ||||||| ||| |||||| || Sbjct 652190 TGAAGTCACCTTTGATATTGATGCAAATGGAATTATGAATGTTGGTGCAATTGATAAGTC 652131 >seq9 Length=412584 Score = 165 bits (182), Expect = 7e-35 Identities = 343/505 (68%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 428100 AACCGGTTCCAATTCCTTCTGTACCATTTACAAGAATCATTGGAATGACTGGTGCATAAT 428159 |||| || |||||||| || ||||||||||| | |||||||||||| | ||| | |||| Sbjct 219976 AACCTGTACCAATTCCATCAGTACCATTTACCAAAATCATTGGAATTATTGGAACGTAAT 219917 Query 428160 ATTGTGGTTCAATCATTTTATTATCTTCATATTGTAAATGTAAAATATCAAAATCATGCT 428219 || |||||||| || ||| |||||| || ||| | | | |||| || Sbjct 219916 ATAAAGGTTCAATTTGTTGTCCATCATCATATAAATAAGTTAATAAAGGATCATCAGCCT 219857 Query 428220 CGATAAATAtttttttAGCCAATTCATCAAGTTGTGTAAAGATATATCTTGCG---CTTG 428276 | || || | | ||| | ||| | || | ||||| ||||| | || |||| Sbjct 219856 CTGGGAAAATATATCTAGTCCATTTAGATAGCTTAGTAAATATATAACGAGCAGCACTTG 219797 Query 428277 CGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGTCCATTAGGCATCAATAAATTAA 428336 | |||||| || ||| ||||| | |||||||| ||| || |||| ||| | Sbjct 219796 C---ATCTTTTCCACCTTCTTTTCTACTACCAAATTGACCACATGGTTCTAATAGATTTA 219740 Query 428337 TATTATTACTTCCCACATAATTTTGGGCCATATTAACAATGGTACTAGTTAAGGATTGTT 428396 |||||||||||| ||| ||||||| |||||||||||||| ||||| || ||| || Sbjct 219739 GATTATTACTTCCAACAAAATTTTGAGCCATATTAACAATAGTACTTTGCAATGATGATT 219680 Query 428397 CACCATGATGATATTTAGTTCTTTTTGAAACTGCACCTTGTAATTCTGATACCTTTATTT 428456 | ||||||||||| | | || | ||| ||| ||||| || | ||||| Sbjct 219679 CTCCATGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTG-CAACTTTA--A 219623 Query 428457 CTTCTTTATAAATACCTTCTTCTACTGATCCATAAAATACTTTGCGTTGTGATGGTTTGA 428516 ||| |||| || || || | || | || ||| |||||| | |||| ||||| | Sbjct 219622 GTTCATTATTAAGCTTTTTTTTAAATGTTGCAAAAAGTACTTTTCTTTGTCCAGGTTTTA 219563 Query 428517 ATCCATCCATAATATTAGGTATAGATCTTAAATTATC--ATCCACTGAGAATGATATTAG 428574 | ||||| | | ||| || |||||||| | |||| ||| ||| ||| ||| || Sbjct 219562 AACCATCTAATAAATTTGGAATAGATCTAGTAGTATCATATCTACT--AAATAATACAAG 219505 Query 428575 TTCTTGATGAATGAAATCATAATAT 428599 ||||| |||||| |||||| ||||| Sbjct 219504 TTCTTTATGAATAAAATCAAAATAT 219480 >seq7 Length=886684 Score = 123 bits (136), Expect = 2e-22 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 ||| | ||| | |||| ||| |||||||||| |||||||| ||| || | |||||| Sbjct 559520 AAGTGGACTCTTTTTG--AATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTT 559463 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| ||||| || | | ||| |||||||| || |||||||| ||||||||||| ||| Sbjct 559462 TCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTTGC 559403 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||||||||| | | | ||| | ||| | ||| || || || | Sbjct 559402 CTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAA 559343 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 ||| ||||||||||| |||||| Sbjct 559342 AGTCTTAACGAAAATCTGCATA 559321 Score = 122 bits (134), Expect = 7e-22 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 ||| | ||| | |||| ||| |||||||||| |||||||| ||| || | |||||| Sbjct 559064 AAGTGGACTCTTTTTG--AATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTT 559007 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| ||||| || | | ||| |||||||| || |||||||| ||||||||||| ||| Sbjct 559006 TCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTTGC 558947 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTA 563451 || || |||||||||||| || || || ||| | ||| | ||| || || || Sbjct 558946 CTTAACATTCTCAATTGTATC--TGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 558889 Query 563452 AGAGTTTTAACGAAAATTTGCATA 563475 | ||| ||||| ||||| |||||| Sbjct 558888 AAAGTCTTAACAAAAATCTGCATA 558865 Score = 113 bits (124), Expect = 4e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||| |||| |||||||| ||| || | ||||||||| ||||| Sbjct 559284 TCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 559225 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCC 563403 || | | ||| |||||||| || ||||| || ||||||||||| ||| || || | Sbjct 559224 ATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTC 559165 Query 563404 TCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACG 563463 ||||||||||| | | | ||| | ||| | ||| || || || | ||| |||||| Sbjct 559164 TCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACG 559105 Query 563464 AAAATTTGCATA 563475 ||||| |||||| Sbjct 559104 AAAATCTGCATA 559093 >seq10 Length=178539 Score = 122 bits (134), Expect = 7e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 930654 AAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTG 930713 |||||| | | ||||| || |||||||| |||||||||||||||||| ||||||| || Sbjct 153296 AAAGTAATTGTAGATTTCTCATCACCAAACATTGCCAAAGAAATGCATGTTGGACACTTA 153355 Query 930714 CGTTCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTT 930773 | ||||| |||||||| || | ||||||| | |||||||| ||| | |||| Sbjct 153356 AGATCTACAATTATTGGTGATACAACATGTAGAATTCTTGAATATTTAGGATTTGAAGTA 153415 Query 930774 CATCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTATATA 930833 |||| ||||| |||| |||||||| || |||||||| ||| | |||| ||| || Sbjct 153416 TTAAGAGTTAATCACGTTGGAGATTGGGGTACTCAATTTGGCATGCTTATTGAATATTTA 153475 >seq1 Length=1283549 Score = 116 bits (128), Expect = 3e-20 Identities = 273/401 (68%), Gaps = 12/401 (3%) Strand=Plus/Plus Query 344255 TTTTATCTCCCACCATTTGTTTGAGACGTTGATAATATGTTGGACCAATGAATATTTTAA 344314 ||||||| | ||||| ||||| || | ||||| || ||||| ||||| || ||| | Sbjct 839023 TTTTATCGTCAACCATATGTTTTAGTCTCTGATAGTAAGTTGGCCCAATAAAGATTCTCG 839082 Query 344315 CTTCCATTCTTTGTCCCGTCATTCCATTATACATTGTTTCATTTCCCCATGCTTCATGT- 344373 |||| ||| | |||||| ||||| |||||| ||||||||| || ||| || Sbjct 839083 ACTCCAATCTCTTTCCCGTATGGCCATTGTACATTACTTCATTTCC--ATTTTTC-TGAA 839139 Query 344374 -CCTAAAGCTACTAAATCATCATTAATTTTATTAATAT-TAACTCCTGTAAATGGAGTTG 344431 || | ||| || | | | | | || | | ||| | ||||| ||||||| Sbjct 839140 ACCCGGAACTATGTAAACGGCTAGATATCTCTTCAACTGTAATTTTCGTAAAAGGAGTTG 839199 Query 344432 CATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCAATTAATTGAC 344491 |||| || | | |||| |||||| || |||| || || | |||||||||||| || | Sbjct 839200 CATCACCCTCCAATCCTTGAATTGCGCACGCTTTGCCAAGCAGACATTCAATTAAATGGC 839259 Query 344492 CTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGAATTAATCCTG 344551 | || |||||||| || ||| || |||||| |||||||| || |||| |||||| Sbjct 839260 CAATTGTCATACGCGAAGGAATAGCATGAGGATTCATAATAATGTCTGGAA-TAATCC-C 839317 Query 344552 ATTTTGTG--AATGGAAGATCTGCA-CGATGAATTTTAAATCCAACTGTTCCTTTTTGTC 344608 || ||||| ||||| | ||| || || || || | || | ||| || ||||| | Sbjct 839318 ATCTTGTGTAAATGGCATATCCTCAGTTCTGTATGTT-ATGCCGATTGTACCCTTTTGGC 839376 Query 344609 CAGCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTT 344649 || ||| |||| || ||||| || || || |||||| Sbjct 839377 CATGTCTAGATGCAAACTTATCTCCAACATGAGGTATTCTT 839417 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||| |||| ||||||||| |||||| | ||| ||||| ||||| || || | Sbjct 548149 ATATTGTAGTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGC 548208 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || |||||||||||||| || || ||||| || || ||| ||||| |||||| ||| Sbjct 548209 TGTTGATCAGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTA 548268 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || | | | ||| | || | || || || || | |||||| || ||||||||| Sbjct 548269 TCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGC 548328 Query 563473 AT 563474 || Sbjct 548329 AT 548330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295048078820