Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 161 3e-34 seq2 127 6e-24 >seq5 Length=914115 Score = 161 bits (178), Expect = 3e-34 Identities = 355/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Minus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 440899 TCCTATCAAATCTTCCTGGACGTGTTAATGCGGGATCTAATACATCAGAACGATTTGTTC 440840 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 440839 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 440781 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 440780 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 440721 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 440720 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 440662 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 440661 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 440602 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | |||| | Sbjct 440601 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCCAATAA 440542 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 440541 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 440484 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 440483 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 440427 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 440426 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 440386 >seq2 Length=1232092 Score = 127 bits (140), Expect = 6e-24 Identities = 286/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 154538 ATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAATGA 154597 ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 373510 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 373451 Query 154598 TTTAGGCTCTGGGTCTTCCATCCATAAAT--TCATACTCTGCGATTGGCAAATATATAAT 154655 | | | | | |||||| || ||| ||| | |||||||| |||| |||| Sbjct 373450 TGCAAAGTTAGCATTTTCCAT--ATGAATGTTCAAAGATTGCGATTGACAAACATATGGA 373393 Query 154656 CCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTAT 154715 || | || |||||||||||||| |||||| ||||||||||||||| |||| || Sbjct 373392 CCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAA 373333 Query 154716 TTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAATA 154775 ||| |||| ||| || | | | |||| ||||| || || || || |||||| Sbjct 373332 AGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATA 373273 Query 154776 ATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT-- 154833 ||||| | ||| | || |||||||||| || | |||| |||| | || || Sbjct 373272 ATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGC 373213 Query 154834 --ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCTGCTG-TAAATATTACTTG 154890 ||||| || || | || ||||| | || | | | | || ||||| || | Sbjct 373212 GGATTTACTA--CAAAG--AACTCACCAGATAGTACTCTAC-GATGATAAATGTTCGAGG 373158 Query 154891 TAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCATGG 154950 ||| ||||||||| | ||| || ||||||||||| || ||| |||||| ||||| | Sbjct 373157 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTG 373098 Query 154951 GAG 154953 ||| Sbjct 373097 GAG 373095 Score = 113 bits (124), Expect = 1e-19 Identities = 344/529 (65%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||||||||||| | || | || || ||| |||| || ||||||| ||| Sbjct 372246 CCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAA 372187 Query 156039 ATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTG 156095 || |||| ||| || | ||| || ||| ||||| | ||||| |||||| | ||| Sbjct 372186 ATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTA 372127 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 | || | ||||| ||||| | ||||| || | ||||| ||||| ||||||| ||| Sbjct 372126 TAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAA 372067 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 |||| | | || |||| | | |||| |||||| | ||| ||| | Sbjct 372066 CCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTT 372007 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 ||||||| ||| || | || ||||| | || ||||| ||| || |||| | Sbjct 372006 GCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAA 371947 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | || || | |||||||||||| || || | || || ||||| |||||||||||| Sbjct 371946 AAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 371887 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTTCTCAAGATTAGACC 156393 ||||||| || | || | | || ||||| || | | || |||| || | | Sbjct 371886 GTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCT--TCAATATCACCAC 371829 Query 156394 CGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCAT 156453 ||||||| |||||||| |||| | ||| || || | || |||| | Sbjct 371828 AATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGT 371769 Query 156454 CAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATC 156502 ||||| ||||| || | | ||| |||||||| || | |||||||| Sbjct 371768 CAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATC 371720 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| |||||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 541217 GAAATAAAGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 541158 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 541157 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 541104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817260562066