Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 179 9e-40 seq9 125 2e-23 >seq2 Length=1232092 Score = 179 bits (198), Expect = 9e-40 Identities = 546/826 (66%), Gaps = 27/826 (3%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 |||||||| ||| ||| ||| | || ||| | |||||| || ||| | | ||||| Sbjct 91016 ATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGATCTAAGTCAAGAT 90957 Query 131525 ATTGATGATTGGGAAAAA-TTAACCTTGAA--TGAAAAAGATTTTGTTTCCAAA---GTT 131578 | | |||||||||| |||| || ||||| | ||||| | |||| ||| Sbjct 90956 ACTAGAGATTGGGAAAGTCTTAAA---GACCCTGAAAGACATTTTAT---CAAATATGTT 90903 Query 131579 CTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATT 131638 | |||||||| || | ||||||||| |||||||| ||||| | | | |||||| || Sbjct 90902 TTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGCAGTAAATTTCCTT 90843 Query 131639 CAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCT 131698 |||||| | || || |||| | | || || | |||||| || ||||| Sbjct 90842 AGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCTATTGAACAA 90783 Query 131699 ATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAA 131758 || ||||| || | ||||||||| | ||||| || | ||| |||| | | || Sbjct 90782 ATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTAC---TGAAATTAAAGAA 90726 Query 131759 AAT-AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGG 131815 | |||| | ||||| || | | | || || | |||||||||||||||||| Sbjct 90725 CGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTAAAAAAGAAAGCAGAATGG 90666 Query 131816 GCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCT 131875 || | ||||||||| | ||| || | |||| || |||| || | | || | Sbjct 90665 GCAACTAAATGGATGAATTCTGAG--CGATC-TTTTGCTGAAAGAATTATTGGATTCTGT 90609 Query 131876 TGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCG 131934 ||||||||| || | ||||| ||| ||||| ||||| || ||||||||||| || || Sbjct 90608 GCTGTTGAAGGAATTCTATTTTCTGGTAGCTTT-TGTGCAATTTTTTGGCTTAAAAAACG 90550 Query 131935 TGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCA 131994 |||| | |||||||||||| |||| || ||| || | || | ||||||| | || Sbjct 90549 TGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCA 90490 Query 131995 TACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATAT 132054 | |||| |||||| ||||| |||| | || |||| | | || | Sbjct 90489 TGCTGATTTTGCTTGTTTAATATATAAAGCCCTTAAATTTAAATTACCAGCTCCTAGAGT 90430 Query 132055 TAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCC 132114 ||||| | ||| ||||| ||||| | || | | ||| || || || | || Sbjct 90429 ACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCC 90370 Query 132115 TTGCAATTTGATTGGGATGAATGC-TGACTCTATGAAGGAGTACATTGAATTCGTTGCTG 132173 | || | ||||| |||||| | |||| |||| | || |||||||| ||||||| Sbjct 90369 TGTTGATCTTATTGGTATGAATTCGAGACT-TATGGCCCAATATATTGAATTTGTTGCTG 90311 Query 132174 ATCGTTTAATTAACCAACTTGGATATTCC-AAGATTTATAACACCCAAAACCCCTATACA 132232 || | ||| || |||||||||||| || || || ||| || || | | Sbjct 90310 ATAGATTACTT-TTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGAT 90252 Query 132233 TGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 |||||||| ||||| ||| |||||||||| ||||||||||||| Sbjct 90251 TGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAA 90206 Score = 102 bits (112), Expect = 2e-16 Identities = 321/490 (66%), Gaps = 23/490 (5%) Strand=Plus/Plus Query 112955 TGATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACTCTCTACTGTT 113014 ||||||| | ||||||||||| || |||||||| | | || |||||| | | Sbjct 373033 TGATTGGGATTTGCTTAAAGATAGGATTTCCAAACATGGTATTCGTAATTCTCTATTAAT 373092 Query 113015 GGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCC 113074 | |||||||| ||||| || ||| | || ||| | ||||| ||||| |||| ||||| Sbjct 373093 ATCTCCAATGCCAACAGCATCCACTTCGCAAATTTTAGGTAACAATGAGAGTTTTGAGCC 373152 Query 113075 AATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAA 113134 | |||| || |||||| || | || ||| | |||||||| ||||||| ||| Sbjct 373153 ATTTACCTCGAACATTTATCATCGTAGAGTACTATCTGGTGAGTT----CTTTGTAGTAA 373208 Query 113135 AT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACT 113190 || || ||| | | || | || | | || |||| | || | || | Sbjct 373209 ATCCGCATTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGGCTTAAGCAGA 373268 Query 113191 CCATTATTGCTAATCAAGGTTCGGTTCAACAT---CTAAAATTGCCTGA----TTGCGTG 113243 |||||||| ||| | || ||||| || || | | | || || | || | Sbjct 373269 ATATTATTGCAAATAATGGCAGTATTCAAAATATACTTACAATTCCGGAAGATATACGCG 373328 Query 113244 AAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCA 113303 || | || ||||||| | ||||||||||||||| |||||||||||||||||| Sbjct 373329 --AGCTTTA--TAAGACTGTATGGGAAATTAAGCAAAAGACAGTAATTGATATGGCTGCA 373384 Query 113304 GATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACA-CCTC 113362 ||| | || | | | |||||| || || ||||| ||| || | | | || Sbjct 373385 GATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAAC--ATTCATATGGAAAATGCTA 373442 Query 113363 AC-CAGATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTA 113421 || | ||| | ||||| | ||||| || |||||||||||| |||||||||| | Sbjct 373443 ACTTTGCAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTAAAAACAGGCA 373502 Query 113422 TGTATTATTT 113431 | |||||||| Sbjct 373503 TTTATTATTT 373512 Score = 100 bits (110), Expect = 7e-16 Identities = 329/505 (65%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || ||| | |||| ||| | | || ||| | ||||||||||||| Sbjct 696598 TTAAAGGTAAAGAAGGACGTTTCAGAGGAAATTTGAGTGGTAAAAGAGTTGATTTTAGTG 696539 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 ||||| ||| || | ||||| || | ||| || ||||| | | || || || Sbjct 696538 GAAGAACTGTTATTTCTCCTGACCCTAATATTGAAGTTGATGAAGTTGTGGTACCTATGA 696479 Query 305106 AAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGA 305165 ||||| ||| | || | ||| || | |||||| | | |||||| | ||| | Sbjct 696478 TCATTGCAAAGAAATTGACTTATCCCGAAAGAGTTAATGCTATTAATATTGACTCTTTAA 696419 Query 305166 GACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 || |||||| |||||| || | | ||||| || | |||| || || | Sbjct 696418 GAGAAGCTGTTCTAAATGGACATGATATTTGGCCAGGAGCATGCTATGTT-TATAAGA-- 696362 Query 305226 AGCAAAAGAAGACAATAT---CTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG- 305281 | || |||| ||| | ||| || ||| || || | || | | | Sbjct 696361 -GTAATGGAAGCAAATCTAGTCTTAGA----TATGCTAATAGAAGAGTTGTATCAGAGCG 696307 Query 305282 -CTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAA 305340 ||||| ||| |||||||| |||||| |||| ||| || | ||||| Sbjct 696306 TCTTGAGATTGGAGATATTGTAGAAAGACATATGAAAACTGGAGATATCGTCTTATTCAA 696247 Query 305341 TAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TG 305399 ||| |||||| | |||| | | ||| ||| |||| ||||| ||| | | || Sbjct 696246 TAGACAACCAAGTTTACATAGACTTAGTATTATGTCTCACAAAGTTGTAGTTATGCCATG 696187 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 || || ||| |||| |||| | |||||||| | ||||||||||| ||||| ||||||| Sbjct 696186 GAGA-ACTTTTAGATTCAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTCGATGGAG 696128 Query 305460 ATGAAATGAATATGCATGTACCTCA 305484 ||||||||||| | ||| | ||||| Sbjct 696127 ATGAAATGAATCTTCATCTTCCTCA 696103 >seq9 Length=412584 Score = 125 bits (138), Expect = 2e-23 Identities = 333/502 (66%), Gaps = 24/502 (5%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || |||||| |||||||||| | ||| || |||||| | | | |||||||| Sbjct 219487 GATTTTATTCATAAAGAACTTGTATTATTTAGTAGATATGATACTACTAGATCTATTCCA 219546 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTG-----TTTCA 279920 ||||| | |||||||| |||||| ||| | || | || || ||| ||| | Sbjct 219547 AATTTATTAGATGGTTTAAAACCTGGACAAAGAAA-AGTACTTT---TTGCAACATTTAA 219602 Query 279921 AAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATG 279980 ||| || || ||| | || || ||||| || ||||| ||||||||| | |||||| Sbjct 219603 AAAAAAGCTTAATAATG-AACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATA 219661 Query 279981 CAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATT 280040 | ||||||||| || ||| | || | ||| || ||||||| | | || ||| ||| Sbjct 219662 GTGCTTATCATCATGGAGAATCATCATTGCAAAGTACTATTGTTAATATGGCTCAAAATT 219721 Query 280041 TTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTC 280100 || | | || || ||||||| | |||| ||||||||||||| | | | Sbjct 219722 TTGTTGGAAGTAATAATCTAAATCTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAAG 219781 Query 280101 ACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATAT-TACA 280159 | |||||||||| || ||||||||| ||| ||| | || ||| || | Sbjct 219782 AAGGTGGAAAAGATGCAAGTGCTGCTCGTTATATATTTAC-------TAAGCTATCTAAA 219834 Query 280160 --AACAAGTTAT-TTATC---AATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGAT 280213 || || ||| || || | ||||| || ||| |||| | || | |||||| Sbjct 219835 TGGACTAGATATATTTTCCCAGAGGCTGATGATCCTTTATTAACTTATTTATATGATGAT 219894 Query 280214 GGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGT 280273 || | |||||||| |||||| | |||||| || || |||||| | || |||||| Sbjct 219895 GGACAACAAATTGAACCTTTATATTACGTTCCAATAATTCCAATGATTTTGGTAAATGGT 219954 Query 280274 GCTCAAGGAATTGGAACAGGTT 280295 || | |||||||| ||||||| Sbjct 219955 ACTGATGGAATTGGTACAGGTT 219976 Score = 96.9 bits (106), Expect = 8e-15 Identities = 241/367 (66%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 || || ||||||||||| ||||||||| ||||| || | | ||| || ||||| || Sbjct 218731 GGAATCCCAAAACTTGAAGATGCAAACGAAGCTGGTGGACCCCATTCTAAAAAATGTACT 218790 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 | | |||||||| || ||||||||| || | | |||| || |||||| || || Sbjct 218791 CTTATACTTACTGAAGGTGATTCTGCTAAAACTTCTTGTCTTGCAGGATTATCTATTGTT 218850 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||| | || | | ||| |||||||| || | |||||| | | |||| | | || Sbjct 218851 GGTAGAGACTATTTTGGAGTATTTCCACTACGTGGTAAACTTTTAAATGTTAGAGA---- 218906 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAA 279304 || | |||||| ||| || || ||||| |||| | ||| | Sbjct 218907 ----------AGCTTCATTTAAA-CAACAAATTGGTAATGTTGAAATACAAAATATTCTT 218955 Query 279305 CAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCA---AGTTTACGATAT 279361 ||||||||||||||| || ||||||| | || | || | |||| ||||| Sbjct 218956 AAAATATTGGGATTAGGTATTGGACAAAAATATGATAATGGACCAGTCAATTTAAGATAT 219015 Query 279362 GGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATA 279421 ||| | || | |||| || |||||| ||||| ||||| ||||||||| | || Sbjct 219016 GGTTCTTTAATGCTAATGACTGATCAAGATCATGATGGTAGTCATATTAAAGGACTCATT 219075 Query 279422 CTTAATT 279428 |||||| Sbjct 219076 ATTAATT 219082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812526291298