Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=1232092 Score = 113 bits (124), Expect = 4e-20 Identities = 374/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Minus Query 43727 GACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 || || ||| |||||| |||||||| | ||||| |||||| | |||||| ||||| Sbjct 91028 GATATTTGGTCAATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGAT 90969 Query 43787 TTGACTAAAGACT-TAGCACATTGG-ATTGCATTAAAACCACAAGAAAAACATTTTATAT 43844 | | | |||| ||| | ||||| | | ||||| | | |||| ||||||||| Sbjct 90968 CTAAGTCAAGATACTAG-AGATTGGGAAAGTCTTAAAGACCCT-GAAAGACATTTTATCA 90911 Query 43845 CTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTC 43904 | ||||| || || |||||||| || || || || || | ||||| || | ||| Sbjct 90910 AATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGC-AGTA 90852 Query 43905 GGTTTGCGCA-AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 ||| | | |||| | ||| |||| ||||| || | ||||| |||||||| | Sbjct 90851 AATTTCCTTAGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCT 90792 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || ||| | || ||| |||| || | || || |||| || || | || Sbjct 90791 ATTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGAAATT 90732 Query 44024 CACGAGAAGCATCGATTG---TTTAATGCGATAG---AAACAGTACCTGCGATTAAACAT 44077 | |||| | || | || ||| | || || | | | | ||| | ||| | Sbjct 90731 AA--AGAA-CGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTG---TAAAAAAG 90678 Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 |||||||| ||||| ||||||||| ||||| | ||||||| ||| || || | Sbjct 90677 AAAGCAGAATGGGCAACTAAATGGATGAATTCTGAGCGATCTTTTGCTGAAAGAATTATT 90618 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTT 44196 | || | ||| ||||| ||| | ||||| || | | |||| | | || |||||| | Sbjct 90617 GGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTG-CAATTTTTTGGCT 90559 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 || ||||| || | |||||||| | || ||||| ||||| | || ||||||||||| Sbjct 90558 TAAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGA 90499 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| | ||| ||||||||||| || Sbjct 90498 AGGTCTCCATGCTGATTTTGCTTGTTT 90472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455912808090