Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7 129 4e-25 seq1 109 4e-19 >seq7 Length=886684 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || ||||| || |||||| | |||||||| | | Sbjct 559322 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 559381 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| || || ||||| | || || ||||| Sbjct 559382 GATACAATTGAGAATGTTAAGGC-AAAGATTCAAGATAAGGAAGGAATCCCACCTGATCA 559440 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | |||||||| Sbjct 559441 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 559500 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| |||||||||||||| ||||| ||||| Sbjct 559501 CATTCAAAAAGAGTCCACTTTACACTTAGT 559530 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| ||||| || | || ||||| || |||||| | |||||||| | Sbjct 558863 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 558922 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| |||| | ||| ||| || || ||||| | || || || Sbjct 558923 TCAGATACAATTGAGAATGTTAAGGC-AAAGATTCAAGATAAGGAAGGAATCCCACCTGA 558981 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| ||||| || ||||| || |||||| | || || | | ||| | ||||| Sbjct 558982 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 559041 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| |||||||||||||| ||||| ||||| Sbjct 559042 CAACATTCAAAAAGAGTCCACTTTACACTTAGT 559074 Score = 125 bits (138), Expect = 5e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || ||||| || |||||| | |||||||| | | Sbjct 559094 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 559153 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| || || || || | || || ||||| Sbjct 559154 GATACAATTGAGAATGTTAAGGC-AAAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 559212 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| ||||| || |||||| | || || | | ||| | || ||||| Sbjct 559213 ACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 559272 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| ||||||||||| || ||||||||||| || || Sbjct 559273 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAG 559308 >seq1 Length=1283549 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| || ||||| | || ||||| || ||||| | |||||||| | Sbjct 548333 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 548274 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||| | |||| ||| || || || || ||| | || || ||| Sbjct 548273 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGAT 548214 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||| | || ||||| || || ||| ||||||| | | ||| || || ||| Sbjct 548213 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 548154 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || || || |||||||| || |||||||| ||||| Sbjct 548153 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTAAG 548116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009525849144