Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305415.1_202015-10- 01] 18 sequences; 9,001,535 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 302 6e-77 >seq2 Length=1232092 Score = 302 bits (334), Expect = 6e-77 Identities = 1178/1827 (64%), Gaps = 45/1827 (2%) Strand=Plus/Minus Query 75412 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAG 75471 || ||| || || || ||||||||||| |||| || || |||||||| || || Sbjct 373513 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 373454 Query 75472 TTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGC 75531 || | | | | | || | |||||||| |||| || || |||| | | | Sbjct 373453 CTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGG 373394 Query 75532 TCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAA 75591 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || | Sbjct 373393 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATA 373334 Query 75592 AA-CTTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATA 75647 || || | | ||||| || |||| | | |||||||||| | ||||| | | Sbjct 373333 AAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATA---CTGCCATTATTTG 373278 Query 75648 TAATTGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGA 75704 ||| |||||| | | | ||||| ||| || ||| |||| | | || | Sbjct 373277 CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCA 373218 Query 75705 GATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGG 75764 ||| ||||| || | || || ||||| | |||||| ||| ||||| || || Sbjct 373217 AATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGG 373158 Query 75765 TATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAG 75824 || |||| || | | |||||||| || |||||||| | ||| || || || ||||| | Sbjct 373157 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTG 373098 Query 75825 GTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCC 75884 | | | |||| | ||| | | ||||||| | || ||||||| || | | || Sbjct 373097 GAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCC 373038 Query 75885 AATCCCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 |||| ||||| | || |||| ||| |||| | ||| |||||| ||| || || | Sbjct 373037 AATCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTAC 372978 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG 76001 | ||| || || |||||||||||| | ||||| ||||| || || || || || | Sbjct 372977 TCGCAGGCGAACCGGAATATGTTTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAG 372918 Query 76002 CCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT-GCGCTTC 76059 | || | || | ||||| || ||| ||||| | ||||| || |||| || | Sbjct 372917 CGTCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCT 372858 Query 76060 AAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAAT 76119 ||||| | | || | | | | ||||| ||||| || || |||| ||||| Sbjct 372857 CAGACT--CGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAAT 372800 Query 76120 ACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAAT 76179 || | || | |||||| ||| || ||| | ||| | || ||||| || Sbjct 372799 CCCCAATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAAC 372740 Query 76180 ATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAA 76239 || || | |||||| | ||| || || || || || || |||| || ||| Sbjct 372739 GTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA 372680 Query 76240 ATCAAA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 |||||| | || | ||||| | || | ||| | ||||| || |||||||| Sbjct 372679 ATCAAACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACA 372620 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 ||||| || || | | | | |||| ||| || || ||||||| ||||| | Sbjct 372619 GACGGCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAAC 372560 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAAC 76410 |||||||| | ||||| ||||| || |||| || || || || |||||| || Sbjct 372559 AATAGTTCCCAAATTTTTCTGGTTACT---TTTGCTATTTGCAGCATCTTTATAACAAAT 372503 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 ||| || || || || ||||| || | | | || | ||| | | ||| || | Sbjct 372502 AAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCT 372445 Query 76471 TATTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATT 76526 | | || | ||| || || | | | | ||||| | | ||||| | | ||| | Sbjct 372444 T-TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAAT 372387 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 |||| ||||||||||| | ||| || ||||||| || ||||| | | ||| || Sbjct 372386 CATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTT 372327 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 ||| | || ||| | || ||| || |||||||| | ||| || ||| ||| ||||| | Sbjct 372326 GATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGC 372267 Query 76647 GGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAG 76706 | ||| ||||| ||||| |||||| | | || | ||||| | || |||| Sbjct 372266 GACATCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAA 372207 Query 76707 AATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTA 76766 ||||| || || | ||| || || || |||| || || || || ||||| | Sbjct 372206 CGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAA 372147 Query 76767 TATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCAT 76826 |||| || ||||||| ||||||||| | || ||| ||||| | || |||||| | |||| Sbjct 372146 TATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCAT 372087 Query 76827 TTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTC 76886 ||||||| |||||| ||| | | | ||||||||| | | | || | || | Sbjct 372086 TTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCAC 372027 Query 76887 CTGCCATTTTA--GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACT 76944 | || | ||| | || | ||| ||| | ||||||| |||| || | ||| Sbjct 372026 CCGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGA 371969 Query 76945 ATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 77004 ||| || || | || | |||||| ||||||||| | | ||| |||| ||| Sbjct 371968 ATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATT 371909 Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 77064 ||| | ||| || | ||||||||| || |||||| || | | | |||||||||| Sbjct 371908 AAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAG 371849 Query 77065 AACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 | ||||| ||||| | |||||| || || ||| ||||||| | ||| || || Sbjct 371848 TGCAGCTTCAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGG 371789 Query 77125 TCGTTCTACAGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAAC 77183 || ||| ||| || || | ||||| || ||| || ||| |||| | |||||| || Sbjct 371788 TCTTTCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGG 371730 Query 77184 CAAAATAGTTGTATGAAAAGTCTCTTT 77210 ||||||| | |||| ||| || |||| Sbjct 371729 CAAAATAATCGTATTCAAAATC-CTTT 371704 Score = 239 bits (264), Expect = 6e-58 Identities = 590/880 (67%), Gaps = 19/880 (2%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 90157 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 90216 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 90217 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 90276 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 90277 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 90335 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | ||||||| || || || | || || |||| || |||||| | | Sbjct 90336 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 90395 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 90396 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 90452 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||||||| ||| || |||||||| | |||||| Sbjct 90453 TTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAAT 90512 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 90513 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 90571 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 90572 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 90631 Query 46787 CGTAA-CTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAA 46845 | || | || ||| || ||||| | ||||| || || || || |||||| Sbjct 90632 CAAAAGATCGC-TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCT 90690 Query 46846 GGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTA 46905 || || || | |||||| | | ||| | | | || ||| |||| || Sbjct 90691 TCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTA 90750 Query 46906 TCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGT 46963 || || | || || ||| |||| ||| || | |||||||| ||| ||||| | | Sbjct 90751 TCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCAT 90808 Query 46964 AAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCAT 47023 || | ||| ||||| | || |||| ||| || || | | | || || || Sbjct 90809 AATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCA 90868 Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 47083 | || || |||||||| |||||||| ||||| || |||| ||| ||||||| | ||||| Sbjct 90869 TAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAG 90928 Query 47084 CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 | | || | | ||| || | |||||| || ||| | |||||||| || Sbjct 90929 GGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCC 90988 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 | || ||||| || |||||||||||||| ||| ||||| Sbjct 90989 AAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 91028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934239589760