Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305435.1_202015-10- 01] 18 sequences; 9,283,240 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 147 3e-30 seq1 109 8e-19 >seq7 Length=866811 Score = 147 bits (162), Expect = 3e-30 Identities = 166/219 (76%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 124533 AATACAA---TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 ||||||| |||| || ||| | ||||| | ||||| || ||||| ||| | || || Sbjct 570807 AATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTT 570866 Query 124590 GAAGCAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACC 124648 ||| | ||||||||| ||| |||| || || ||||||||||| ||||| || || Sbjct 570867 GAACCTTCAGATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAAGGAATCCC 570925 Query 124649 ACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGA 124708 ||||||||||||| | | || |||||||||||||||||||||||| || |||| | Sbjct 570926 ACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTC 570985 Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| || ||||||||||| || ||||| || || || Sbjct 570986 TGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGT 571024 >seq1 Length=1284088 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||||| || || || || | || ||||| | Sbjct 551700 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 551641 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| || || || ||||| || ||||| || ||||||||| Sbjct 551640 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAA 551581 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| ||||| || ||| || |||| || || || ||| Sbjct 551580 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 551521 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 || || || || || ||||||||||| || ||| Sbjct 551520 ATCCAGAAGGAGTCCACTTTGCATTTAGTATTA 551488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455830022400