Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305435.1_202015-10- 01] 18 sequences; 9,283,240 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 331 1e-85 >seq2 Length=1237296 Score = 331 bits (366), Expect = 1e-85 Identities = 1203/1856 (65%), Gaps = 40/1856 (2%) Strand=Plus/Minus Query 78717 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 78775 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 373919 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 373861 Query 78776 GACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 78835 |||| |||| || || ||||||||| | || || | | | | | || | | | Sbjct 373860 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 373801 Query 78836 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 78895 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 373800 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 373741 Query 78896 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 78954 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 373740 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 373682 Query 78955 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011 | || | |||| ||||| ||| || ||| ||||| | | ||| | | ||| Sbjct 373681 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 373622 Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 373621 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 373562 Query 79072 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTT 79131 ||||| | |||||| ||| ||||| || |||| |||| || | ||||| || Sbjct 373561 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 373502 Query 79132 CCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 79191 || |||||||| | ||| ||||| |||||||| || | | |||| | ||| | || | Sbjct 373501 CCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 373442 Query 79192 CCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA---CGGGA 79246 || ||| | | || ||||||| || | |||||||| ||||| |||| || Sbjct 373441 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 373384 Query 79247 CAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTT 79306 ||| ||| | |||| |||||| |||||| ||||| || || || | ||||||| Sbjct 373383 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 373324 Query 79307 CATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGG 79366 | || || || | ||||| || | ||||| || || || | ||| | ||||| || Sbjct 373323 CGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 373264 Query 79367 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTC--TAGGCTATCAAATGG-ATAATTTA 79423 ||| ||||| | ||||| | | | ||| | || | || | || ||| | Sbjct 373263 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 373208 Query 79424 AG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 79482 || | ||||| |||||| | ||||||| ||||| || | || | |||||| | Sbjct 373207 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 373148 Query 79483 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC 79542 || || ||| | ||| | || |||||| || || || | |||||| | |||| Sbjct 373147 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 373088 Query 79543 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA---TT 79599 || || || || || || |||| || ||||||||| |||| || || Sbjct 373087 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTT 373029 Query 79600 ACAAAC--ATGTTCAACG--CGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 79655 | ||| || || | | | | ||| ||||||||||| ||||| || || | | Sbjct 373028 ATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCT 372969 Query 79656 CGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTG 79715 | |||| ||| ||||| ||||| | |||||| | ||| ||||| ||||||| || Sbjct 372968 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 372909 Query 79716 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTG 79775 ||||| || | || ||||| |||||| ||| || || || || || ||||| || Sbjct 372908 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 372849 Query 79776 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTT 79834 || | || || ||| | | || | || || || | | | | || Sbjct 372848 AGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTT 372790 Query 79835 CTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAG 79894 | | || || | | ||||| | || || || ||||||||||| | ||||| Sbjct 372789 GTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCC 372730 Query 79895 GACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGA 79954 ||||| || || ||||| | | ||| ||| ||| | || |||| || ||| || | Sbjct 372729 TGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACA 372670 Query 79955 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 80014 ||||||||| |||||| || ||| ||||| | ||| ||| || ||||| || Sbjct 372669 GATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGAT 372610 Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074 |||| | | || | ||| | | || |||| |||||||| ||||| || || || | Sbjct 372609 TCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAA 372550 Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134 | | || || || ||| || ||||| || || ||||| |||| ||||||||| | Sbjct 372549 TGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGC 372490 Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194 || ||| ||||| | ||||| ||| | ||||| || || ||||| ||| | Sbjct 372489 GCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTC 372430 Query 80195 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 | | ||||||||| | || | || | || || || | ||| || ||||||| Sbjct 372429 CTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATT 372370 Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATC---AATCATGTTAAGTAGAAAAC 80311 ||| || ||| |||| || | ||| ||| || |||| || |||| ||||| Sbjct 372369 TAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTG---AGTAAAAAAC 372313 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 | |||||||| | || ||| || | |||||| | || || | || || |||| Sbjct 372312 AAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAA 372253 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAA 80431 | |||||| || | | | || || |||| || | ||| ||||| | ||||| Sbjct 372252 AATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAA 372193 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491 | || | ||| ||||| | | || || |||||||| || | ||||| | |||| Sbjct 372192 TACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTT 372133 Query 80492 TCAACAAG-TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 | || ||| || ||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 372132 T-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 372078 Score = 232 bits (256), Expect = 1e-55 Identities = 591/881 (67%), Gaps = 45/881 (5%) Strand=Plus/Plus Query 49645 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 49701 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 84725 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 84784 Query 49702 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 49761 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 84785 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 84844 Query 49762 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTC 49821 |||||| || |||| || ||| |||||||| || |||||||| |||||| | Sbjct 84845 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 84904 Query 49822 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 49881 || | | ||||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 84905 ATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 84964 Query 49882 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 49941 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 84965 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 85015 Query 49942 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 49991 |||| | ||| | || ||||| || ||||| ||| || ||||| || || | Sbjct 85016 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACG 85074 Query 49992 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 50051 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 85075 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 85134 Query 50052 TATGGACGCAAATG-ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 || | | |||| | |||||||| | |||||||| || || || ||| || || Sbjct 85135 AATTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 85193 Query 50111 TCTCTCCATAA-CTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 50169 | || || || | || | | || ||||| || ||||| || || ||||||||| Sbjct 85194 TTTCAGCAAAAGATCGCTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTT 85252 Query 50170 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 50225 ||| || || | || || | |||||| | ||| ||| | || | Sbjct 85253 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGT 85308 Query 50226 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 85309 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 85366 Query 50284 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC 50342 ||||| | || | ||| |||||| || | || || | |||| || || | | || Sbjct 85367 TGAAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGC 85425 Query 50343 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 50402 ||| ||||| | || || || ||||| || ||||| || || || |||| ||| ||||| Sbjct 85426 TAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAA 85485 Query 50403 ATGTTTTTCGTTGGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACT 50460 |||| |||| |||| || || | | |||||| | |||||| | || ||| | | Sbjct 85486 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATT 85543 Query 50461 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||||| |||||| || || || || ||||||||||| Sbjct 85544 TCTTCAGTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 85584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268638389520