Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305435.1_202015-10- 01] 18 sequences; 9,283,240 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 134 7e-27 >seq2 Length=1237296 Score = 134 bits (148), Expect = 7e-27 Identities = 318/477 (67%), Gaps = 4/477 (1%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 || ||| || | || | |||||| || | ||||||| | ||||| || | ||| || Sbjct 372722 ATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGG 372663 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||| | ||| ||| | ||| | |||||| ||||| |||||||||||||| | Sbjct 372662 AACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTTCCT 372603 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | || | || || | || ||| |||||| || || ||||| || |||| ||| Sbjct 372602 GATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGCACC 372543 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||| | || |||||||||||||| | || || ||||| ||||| |||| || ||| Sbjct 372542 TTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCAT 372483 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||| ||||||| | || || ||||| | |||| | || || || |||||| Sbjct 372482 CGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAAT 372423 Query 26188 ATCGTGAGCA-TG-AATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245 || | || || | || | ||||| || || ||| ||| || | | Sbjct 372422 AT--TACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATTTAGTT 372365 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | ||| || || || || ||||| ||| || || | | |||||||||||| || Sbjct 372364 AGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGAC 372305 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | ||| | | | || ||||||||||| | ||| ||||| ||||||||| ||||| Sbjct 372304 ATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATAT 372248 Score = 95.1 bits (104), Expect = 6e-15 Identities = 305/466 (65%), Gaps = 22/466 (5%) Strand=Plus/Minus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 || || | |||||| || || ||||| | || |||||||| ||||||||||| ||| Sbjct 373888 GTCCTTAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGAT 373829 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACA 24814 | || ||||||| ||| || ||| | | | ||||| ||||| | ||| |||||| Sbjct 373828 GATAACTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACA 373769 Query 24815 AAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTT 24874 | | ||||||||||| | ||||| | || || | || || | | || Sbjct 373768 TATGGACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTC 373709 Query 24875 TTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAA--CTGATCCATTTT 24932 || || ||| ||| || ||||| | |||||||||| ||| ||||| | Sbjct 373708 TTATAAAGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAATACTG--CCATTAT 373651 Query 24933 CTCTCAATAG-ATTC-----AATCTCAT-ATTCGGTGTCCAAAGATTAATTTTTTCAAGA 24985 | ||||| |||| || | || || | | || ||| | | | | | Sbjct 373650 TTG-CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGT------AAA 373598 Query 24986 TCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGAT 25045 || | | ||| || ||||| | || || || ||||| | ||||| | |||| Sbjct 373597 TCATTTAGCAAATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGA--TGAT 373540 Query 25046 AA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATG 25103 || ||| || || ||||| ||||||| ||||| || ||||| ||||| ||||| |||| Sbjct 373539 AAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATG 373480 Query 25104 CTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTT 25149 ||||||||||| | ||||||||| ||||| | | ||||| ||| Sbjct 373479 CTGTTGGCATTGGAGATATTAATAGAGAATTACGAATACCATGTTT 373434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039944489350