Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305435.1_202015-10- 01] 18 sequences; 9,283,240 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 172 1e-37 seq1 158 2e-33 seq7 145 2e-29 >seq2 Length=1237296 Score = 172 bits (190), Expect = 1e-37 Identities = 483/732 (66%), Gaps = 28/732 (4%) Strand=Plus/Plus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCAC-AATTCATACCCAATA 49707 ||||||||| || |||||||||| |||||| | ||| || || | |||||||||| |||| Sbjct 84871 TAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACC-AATA 84928 Query 49708 ATTTAAATGGTAATGCA-TCATCAATAAATTCtttttctatttctacagcttgtttaatt 49766 | | || | || | ||| || ||| | | |||| | ||| ||||||| | || Sbjct 84929 AGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATG 84988 Query 49767 atcataattatattattttt--tgataatttatatttaatatgattcgcatatattaaAC 49824 || | || || | | || ||||||| |||||| || ||||||||||| Sbjct 84989 AT--TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTT---ATATATTAAAC 85043 Query 49825 ATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 49884 | |||||||||| ||| | ||| || || | | |||| ||||||| ||| || | || Sbjct 85044 AAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTC 85103 Query 49885 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 49944 | ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | | Sbjct 85104 CAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAA 85163 Query 49945 TACCCTCGACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 | || || ||| | || ||| | || |||||| | |||| || ||| ||| Sbjct 85164 TTCCTTCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAG---ATCGCTCAG--AAT 85217 Query 50004 --ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 ||||| || | ||||| |||||||| ||||| | || |||| || |||| Sbjct 85218 TCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTT 85277 Query 50062 TAAATAATTCAttttt--ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 ||| | ||||| ||| | || | ||| ||||| Sbjct 85278 CAAAGAG--CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATA 85335 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGA 50179 ||||| ||||| ||| |||| |||||||| | |||| | ||| ||||| | Sbjct 85336 AGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGG 85395 Query 50180 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239 || | ||| || ||| | | |||| || || |||||||||||| ||| Sbjct 85396 TATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGC 85455 Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 50299 || |||||||||||||| ||||| ||||||||| ||||| ||||| | | ||||||| Sbjct 85456 AGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCA 85515 Query 50300 AGATTCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT 50357 | | | ||| |||| || ||| | |||||| | |||||| || ||| | | | Sbjct 85516 ATCTCTAGTATC--TTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCT 85573 Query 50358 TTTTTATACATT 50369 |||||||||||| Sbjct 85574 TTTTTATACATT 85585 >seq1 Length=1284088 Score = 158 bits (174), Expect = 2e-33 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| | ||| |||||||| | |||||||||||| ||||| | ||| || |||||| || Sbjct 551467 AATTACACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTA 551526 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||||| |||| |||| |||||||| || ||||||||||| | | ||||||||| Sbjct 551527 GTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATC 551586 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || || || || ||||| || || || |||||||| |||| ||| || | Sbjct 551587 AGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGG 551646 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||| ||||| | || ||||| || || ||||| ||||| | ||| || ||||| || || Sbjct 551647 TTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTTCTT 551706 >seq7 Length=866811 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| | | ||||| |||||||| | |||||| || || |||||| Sbjct 571045 ATTCCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 570986 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 570985 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 570926 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || || ||||| || | |||||| | ||| Sbjct 570925 GGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 570866 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || || || || || || || |||| ||| |||||||| || Sbjct 570865 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 570813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479772954300