Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305435.1_202015-10- 01] 18 sequences; 9,283,240 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 seq1 138 2e-27 >seq2 Length=1237296 Score = 158 bits (174), Expect = 2e-33 Identities = 547/849 (64%), Gaps = 26/849 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| |||||| |||| | |||||||| ||||| ||||| |||| | ||| || | | Sbjct 84753 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 84812 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAAT 38951 ||| ||||||| ||||| || || |||||| |||| || || | | | Sbjct 84813 CCATCCAATCAAAAGGATTAGAAACGTTGTAG-ATTTTTGGAATATCCAAGGCAAAAAGT 84871 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCAC-AATTCATACCCAATAA 39010 |||||||| || |||||||||| |||||| ||| || || | |||||||||| ||||| Sbjct 84872 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACC-AATAA 84929 Query 39011 TTTAAATGGTAATGCA-TCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || | || | ||| || ||| | | |||| | ||| ||||||| | || | Sbjct 84930 GATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 84989 Query 39070 tcataattatattattttt--tgataatttatatttaatatgattcgcatataGTAAACA 39127 | | || || | | || ||||||| |||||| || ||||| |||||| Sbjct 84990 T--TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTT---ATATATTAAACA 85044 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||||| | ||| | |||||| || | | |||| ||||||| ||| || | ||| Sbjct 85045 AGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 85104 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | || Sbjct 85105 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 85164 Query 39248 ACCCTCCACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 || || ||| | || ||| | || |||||| | |||| | | | || | Sbjct 85165 TCCTTCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATTCA--- 85220 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| || | ||||| |||||||| ||||| | || |||| || |||| || Sbjct 85221 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAA 85280 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--GAATACAT 39424 | | ||| | ||||| | Sbjct 85281 AGAG--CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGT 85338 Query 39425 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA 39484 |||| ||||| ||| |||| |||||||| | |||| | || ||||| | Sbjct 85339 TTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTAT 85398 Query 39485 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 39544 || | ||| || ||| | | |||| || || |||||||||||| ||| || Sbjct 85399 TTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGC 85458 Query 39545 GAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 39604 |||||||||||||||||||| ||||||||| ||||| ||||| | | |||||||| Sbjct 85459 AAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAATC 85518 Query 39605 TTCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662 | | ||| |||| || ||| | |||||| | |||||| || ||| | | |||| Sbjct 85519 TCTAGTATC--TTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTT 85576 Query 39663 TTATACATT 39671 ||||||||| Sbjct 85577 TTATACATT 85585 >seq1 Length=1284088 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||||| |||||||||||| ||||| | ||| || ||||| || || || Sbjct 551473 ACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGA 551532 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || || || | || |||||||| || |||||||| || | | |||||| ||||| || Sbjct 551533 TAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGG 551592 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || ||||| || || || |||||||| |||||||| || | ||| || Sbjct 551593 AATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAAC 551652 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 ||| | || ||||| || || ||||| ||||| | || || ||||| || || Sbjct 551653 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTTCTT 551706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135796344400