Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305435.1_202015-10- 01] 18 sequences; 9,283,240 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 179 9e-40 seq9 125 2e-23 >seq2 Length=1237296 Score = 179 bits (198), Expect = 9e-40 Identities = 546/826 (66%), Gaps = 27/826 (3%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 |||||||| ||| ||| ||| | || ||| | |||||| || ||| | | ||||| Sbjct 85584 ATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGATCTAAGTCAAGAT 85525 Query 131525 ATTGATGATTGGGAAAAA-TTAACCTTGAA--TGAAAAAGATTTTGTTTCCAAA---GTT 131578 | | |||||||||| |||| || ||||| | ||||| | |||| ||| Sbjct 85524 ACTAGAGATTGGGAAAGTCTTAAA---GACCCTGAAAGACATTTTAT---CAAATATGTT 85471 Query 131579 CTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATT 131638 | |||||||| || | ||||||||| |||||||| ||||| | | | |||||| || Sbjct 85470 TTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGCAGTAAATTTCCTT 85411 Query 131639 CAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCT 131698 |||||| | || || |||| | | || || | |||||| || ||||| Sbjct 85410 AGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCTATTGAACAA 85351 Query 131699 ATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAA 131758 || ||||| || | ||||||||| | ||||| || | ||| |||| | | || Sbjct 85350 ATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTAC---TGAAATTAAAGAA 85294 Query 131759 AAT-AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGG 131815 | |||| | ||||| || | | | || || | |||||||||||||||||| Sbjct 85293 CGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTAAAAAAGAAAGCAGAATGG 85234 Query 131816 GCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCT 131875 || | ||||||||| | ||| || | |||| || |||| || | | || | Sbjct 85233 GCAACTAAATGGATGAATTCTGAG--CGATC-TTTTGCTGAAAGAATTATTGGATTCTGT 85177 Query 131876 TGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCG 131934 ||||||||| || | ||||| ||| ||||| ||||| || ||||||||||| || || Sbjct 85176 GCTGTTGAAGGAATTCTATTTTCTGGTAGCTTT-TGTGCAATTTTTTGGCTTAAAAAACG 85118 Query 131935 TGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCA 131994 |||| | |||||||||||| |||| || ||| || | || | ||||||| | || Sbjct 85117 TGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCA 85058 Query 131995 TACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATAT 132054 | |||| |||||| ||||| |||| | || |||| | | || | Sbjct 85057 TGCTGATTTTGCTTGTTTAATATATAAAGCCCTTAAATTTAAATTACCAGCTCCTAGAGT 84998 Query 132055 TAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCC 132114 ||||| | ||| ||||| ||||| | || | | ||| || || || | || Sbjct 84997 ACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCC 84938 Query 132115 TTGCAATTTGATTGGGATGAATGC-TGACTCTATGAAGGAGTACATTGAATTCGTTGCTG 132173 | || | ||||| |||||| | |||| |||| | || |||||||| ||||||| Sbjct 84937 TGTTGATCTTATTGGTATGAATTCGAGACT-TATGGCCCAATATATTGAATTTGTTGCTG 84879 Query 132174 ATCGTTTAATTAACCAACTTGGATATTCC-AAGATTTATAACACCCAAAACCCCTATACA 132232 || | ||| || |||||||||||| || || || ||| || || | | Sbjct 84878 ATAGATTACTT-TTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGAT 84820 Query 132233 TGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 |||||||| ||||| ||| |||||||||| ||||||||||||| Sbjct 84819 TGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAA 84774 Score = 102 bits (112), Expect = 2e-16 Identities = 321/490 (66%), Gaps = 23/490 (5%) Strand=Plus/Plus Query 112955 TGATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACTCTCTACTGTT 113014 ||||||| | ||||||||||| || |||||||| | | || |||||| | | Sbjct 373403 TGATTGGGATTTGCTTAAAGATAGGATTTCCAAACATGGTATTCGTAATTCTCTATTAAT 373462 Query 113015 GGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCC 113074 | |||||||| ||||| || ||| | || ||| | ||||| ||||| |||| ||||| Sbjct 373463 ATCTCCAATGCCAACAGCATCCACTTCGCAAATTTTAGGTAACAATGAGAGTTTTGAGCC 373522 Query 113075 AATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAA 113134 | |||| || |||||| || | || ||| | |||||||| ||||||| ||| Sbjct 373523 ATTTACCTCGAACATTTATCATCGTAGAGTACTATCTGGTGAGTT----CTTTGTAGTAA 373578 Query 113135 AT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACT 113190 || || ||| | | || | || | | || |||| | || | || | Sbjct 373579 ATCCGCATTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGGCTTAAGCAGA 373638 Query 113191 CCATTATTGCTAATCAAGGTTCGGTTCAACAT---CTAAAATTGCCTGA----TTGCGTG 113243 |||||||| ||| | || ||||| || || | | | || || | || | Sbjct 373639 ATATTATTGCAAATAATGGCAGTATTCAAAATATACTTACAATTCCGGAAGATATACGCG 373698 Query 113244 AAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCA 113303 || | || ||||||| | ||||||||||||||| |||||||||||||||||| Sbjct 373699 --AGCTTTA--TAAGACTGTATGGGAAATTAAGCAAAAGACAGTAATTGATATGGCTGCA 373754 Query 113304 GATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACA-CCTC 113362 ||| | || | | | |||||| || || ||||| ||| || | | | || Sbjct 373755 GATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAAC--ATTCATATGGAAAATGCTA 373812 Query 113363 AC-CAGATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTA 113421 || | ||| | ||||| | ||||| || |||||||||||| |||||||||| | Sbjct 373813 ACTTTGCAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTAAAAACAGGCA 373872 Query 113422 TGTATTATTT 113431 | |||||||| Sbjct 373873 TTTATTATTT 373882 Score = 100 bits (110), Expect = 7e-16 Identities = 329/505 (65%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || ||| | |||| ||| | | || ||| | ||||||||||||| Sbjct 699566 TTAAAGGTAAAGAAGGACGTTTCAGAGGAAATTTGAGTGGTAAAAGAGTTGATTTTAGTG 699507 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 ||||| ||| || | ||||| || | ||| || ||||| | | || || || Sbjct 699506 GAAGAACTGTTATTTCTCCTGACCCTAATATTGAAGTTGATGAAGTTGTGGTACCTATGA 699447 Query 305106 AAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGA 305165 ||||| ||| | || | ||| || | |||||| | | |||||| | ||| | Sbjct 699446 TCATTGCAAAGAAATTGACTTATCCCGAAAGAGTTAATGCTATTAATATTGACTCTTTAA 699387 Query 305166 GACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 || |||||| |||||| || | | ||||| || | |||| || || | Sbjct 699386 GAGAAGCTGTTCTAAATGGACATGATATTTGGCCAGGAGCATGCTATGTT-TATAAGA-- 699330 Query 305226 AGCAAAAGAAGACAATAT---CTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG- 305281 | || |||| ||| | ||| || ||| || || | || | | | Sbjct 699329 -GTAATGGAAGCAAATCTAGTCTTAGA----TATGCTAATAGAAGAGTTGTATCAGAGCG 699275 Query 305282 -CTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAA 305340 ||||| ||| |||||||| |||||| |||| ||| || | ||||| Sbjct 699274 TCTTGAGATTGGAGATATTGTAGAAAGACATATGAAAACTGGAGATATCGTCTTATTCAA 699215 Query 305341 TAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TG 305399 ||| |||||| | |||| | | ||| ||| |||| ||||| ||| | | || Sbjct 699214 TAGACAACCAAGTTTACATAGACTTAGTATTATGTCTCACAAAGTTGTAGTTATGCCATG 699155 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 || || ||| |||| |||| | |||||||| | ||||||||||| ||||| ||||||| Sbjct 699154 GAGA-ACTTTTAGATTCAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTCGATGGAG 699096 Query 305460 ATGAAATGAATATGCATGTACCTCA 305484 ||||||||||| | ||| | ||||| Sbjct 699095 ATGAAATGAATCTTCATCTTCCTCA 699071 >seq9 Length=398675 Score = 125 bits (138), Expect = 2e-23 Identities = 333/502 (66%), Gaps = 24/502 (5%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || |||||| |||||||||| | ||| || |||||| | | | |||||||| Sbjct 216302 GATTTTATTCATAAAGAACTTGTATTATTTAGTAGATATGATACTACTAGATCTATTCCA 216361 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTG-----TTTCA 279920 ||||| | |||||||| |||||| ||| | || | || || ||| ||| | Sbjct 216362 AATTTATTAGATGGTTTAAAACCTGGACAAAGAAA-AGTACTTT---TTGCAACATTTAA 216417 Query 279921 AAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATG 279980 ||| || || ||| | || || ||||| || ||||| ||||||||| | |||||| Sbjct 216418 AAAAAAGCTTAATAATG-AACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATA 216476 Query 279981 CAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATT 280040 | ||||||||| || ||| | || | ||| || ||||||| | | || ||| ||| Sbjct 216477 GTGCTTATCATCATGGAGAATCATCATTGCAAAGTACTATTGTTAATATGGCTCAAAATT 216536 Query 280041 TTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTC 280100 || | | || || ||||||| | |||| ||||||||||||| | | | Sbjct 216537 TTGTTGGAAGTAATAATCTAAATCTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAAG 216596 Query 280101 ACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATAT-TACA 280159 | |||||||||| || ||||||||| ||| ||| | || ||| || | Sbjct 216597 AAGGTGGAAAAGATGCAAGTGCTGCTCGTTATATATTTAC-------TAAGCTATCTAAA 216649 Query 280160 --AACAAGTTAT-TTATC---AATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGAT 280213 || || ||| || || | ||||| || ||| |||| | || | |||||| Sbjct 216650 TGGACTAGATATATTTTCCCAGAGGCTGATGATCCTTTATTAACTTATTTATATGATGAT 216709 Query 280214 GGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGT 280273 || | |||||||| |||||| | |||||| || || |||||| | || |||||| Sbjct 216710 GGACAACAAATTGAACCTTTATATTACGTTCCAATAATTCCAATGATTTTGGTAAATGGT 216769 Query 280274 GCTCAAGGAATTGGAACAGGTT 280295 || | |||||||| ||||||| Sbjct 216770 ACTGATGGAATTGGTACAGGTT 216791 Score = 96.9 bits (106), Expect = 8e-15 Identities = 241/367 (66%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 || || ||||||||||| ||||||||| ||||| || | | ||| || ||||| || Sbjct 215546 GGAATCCCAAAACTTGAAGATGCAAACGAAGCTGGTGGACCCCATTCTAAAAAATGTACT 215605 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 | | |||||||| || ||||||||| || | | |||| || |||||| || || Sbjct 215606 CTTATACTTACTGAAGGTGATTCTGCTAAAACTTCTTGTCTTGCAGGATTATCTATTGTT 215665 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||| | || | | ||| |||||||| || | |||||| | | |||| | | || Sbjct 215666 GGTAGAGACTATTTTGGAGTATTTCCACTACGTGGTAAACTTTTAAATGTTAGAGA---- 215721 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAA 279304 || | |||||| ||| || || ||||| |||| | ||| | Sbjct 215722 ----------AGCTTCATTTAAA-CAACAAATTGGTAATGTTGAAATACAAAATATTCTT 215770 Query 279305 CAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCA---AGTTTACGATAT 279361 ||||||||||||||| || ||||||| | || | || | |||| ||||| Sbjct 215771 AAAATATTGGGATTAGGTATTGGACAAAAATATGATAATGGACCAGTCAATTTAAGATAT 215830 Query 279362 GGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATA 279421 ||| | || | |||| || |||||| ||||| ||||| ||||||||| | || Sbjct 215831 GGTTCTTTAATGCTAATGACTGATCAAGATCATGATGGTAGTCATATTAAAGGACTCATT 215890 Query 279422 CTTAATT 279428 |||||| Sbjct 215891 ATTAATT 215897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812526291298